标题
Genomics and Bioinformatics Resources for Crop Improvement
作者
关键词
-
出版物
PLANT AND CELL PHYSIOLOGY
Volume 51, Issue 4, Pages 497-523
出版商
Oxford University Press (OUP)
发表日期
2010-03-07
DOI
10.1093/pcp/pcq027
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genome sequencing and analysis of the model grass Brachypodium distachyon
- (2010) John P. Vogel et al. NATURE
- Genome sequence of the palaeopolyploid soybean
- (2010) Jeremy Schmutz et al. NATURE
- Proteomics by Mass Spectrometry: Approaches, Advances, and Applications
- (2009) John R. Yates et al. Annual Review of Biomedical Engineering
- Structure and Dynamics of Membrane Proteins by Magic Angle Spinning Solid-State NMR
- (2009) Ann McDermott Annual Review of Biophysics
- Roles of Plant Small RNAs in Biotic Stress Responses
- (2009) Virginia Ruiz-Ferrer et al. Annual Review of Plant Biology
- Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns
- (2009) Kanako Kawaura et al. BMC GENOMICS
- Correlation exploration of metabolic and genomic diversity in rice
- (2009) Keiichi Mochida et al. BMC GENOMICS
- A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus
- (2009) M Carmen Marques et al. BMC GENOMICS
- Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
- (2009) Jingyu Zhang et al. BMC GENOMICS
- Development and implementation of high-throughput SNP genotyping in barley
- (2009) Timothy J Close et al. BMC GENOMICS
- Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays
- (2009) Amy N Bernardo et al. BMC GENOMICS
- A set of EST-SNPs for map saturation and cultivar identification in melon
- (2009) Wim Deleu et al. BMC PLANT BIOLOGY
- Development and diversity of Andean-derived, gene-based microsatellites for common bean (Phaseolus vulgaris L.)
- (2009) Matthew W Blair et al. BMC PLANT BIOLOGY
- A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers
- (2009) Emma S Mace et al. BMC PLANT BIOLOGY
- Protein structure prediction: when is it useful?
- (2009) Yang Zhang CURRENT OPINION IN STRUCTURAL BIOLOGY
- Development of 5006 Full-Length CDNAs in Barley: A Tool for Accessing Cereal Genomics Resources
- (2009) K. Sato et al. DNA RESEARCH
- In silico Analysis of Transcription Factor Repertoire and Prediction of Stress Responsive Transcription Factors in Soybean
- (2009) K. Mochida et al. DNA RESEARCH
- A Brassica rapa Linkage Map of EST-based SNP Markers for Identification of Candidate Genes Controlling Flowering Time and Leaf Morphological Traits
- (2009) F. Li et al. DNA RESEARCH
- High-throughput genotyping by whole-genome resequencing
- (2009) X. Huang et al. GENOME RESEARCH
- Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings
- (2009) Tomoko Igawa et al. JOURNAL OF EXPERIMENTAL BOTANY
- Functional genomics using RIKEN Arabidopsis thaliana full-length cDNAs
- (2009) Motoaki Seki et al. JOURNAL OF PLANT RESEARCH
- Soybean Proteome Database: A Data Resource for Plant Differential Omics
- (2009) Katsumi Sakata et al. JOURNAL OF PROTEOME RESEARCH
- Plant proteomics update (2007–2008): Second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards, increase plant proteome coverage and expand biological knowledge
- (2009) Jesús V. Jorrín-Novo et al. Journal of Proteomics
- A force to fight global warming
- (2009) Will R. Turner et al. NATURE
- The Sorghum bicolor genome and the diversification of grasses
- (2009) Andrew H. Paterson et al. NATURE
- A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies
- (2009) Yuling Jiao et al. NATURE GENETICS
- System-wide molecular evidence for phenotypic buffering in Arabidopsis
- (2009) Jingyuan Fu et al. NATURE GENETICS
- Applying mass spectrometry-based proteomics to genetics, genomics and network biology
- (2009) Matthias Gstaiger et al. NATURE REVIEWS GENETICS
- ChIP–seq: advantages and challenges of a maturing technology
- (2009) Peter J. Park NATURE REVIEWS GENETICS
- Phenome Analysis in Plant Species Using Loss-of-Function and Gain-of-Function Mutants
- (2009) T. Kuromori et al. PLANT AND CELL PHYSIOLOGY
- Functional Analysis of Transcription Factors in Arabidopsis
- (2009) Nobutaka Mitsuda et al. PLANT AND CELL PHYSIOLOGY
- Web-Queryable Large-Scale Data Sets for Hypothesis Generation in Plant Biology
- (2009) S. M. Brady et al. PLANT CELL
- Global Identification of Targets of the Arabidopsis MADS Domain Protein AGAMOUS-Like15
- (2009) Y. Zheng et al. PLANT CELL
- A Chloroplastic UDP-Glucose Pyrophosphorylase from Arabidopsis Is the Committed Enzyme for the First Step of Sulfolipid Biosynthesis
- (2009) Y. Okazaki et al. PLANT CELL
- Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis
- (2009) Yoshiharu Y. Yamamoto et al. PLANT JOURNAL
- Stress-induced changes in theArabidopsis thalianatranscriptome analyzed using whole-genome tiling arrays
- (2009) Georg Zeller et al. PLANT JOURNAL
- TriFLDB: A Database of Clustered Full-Length Coding Sequences from Triticeae with Applications to Comparative Grass Genomics
- (2009) K. Mochida et al. PLANT PHYSIOLOGY
- Metabolic Pathways Involved in Cold Acclimation Identified by Integrated Analysis of Metabolites and Transcripts Regulated by DREB1A and DREB2A
- (2009) K. Maruyama et al. PLANT PHYSIOLOGY
- I-TASSER: Fully automated protein structure prediction in CASP8
- (2009) Yang Zhang PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- New changes in the plasma-membrane-associated proteome of rice roots under salt stress
- (2009) Yanwei Cheng et al. PROTEOMICS
- The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria
- (2009) N. A. Moran et al. SCIENCE
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
- Next-generation sequencing technologies and their implications for crop genetics and breeding
- (2009) Rajeev K. Varshney et al. TRENDS IN BIOTECHNOLOGY
- Sequencing, Mapping, and Analysis of 27,455 Maize Full-Length cDNAs
- (2009) Carol Soderlund et al. PLoS Genetics
- The 1001 Genomes Project for Arabidopsis thaliana
- (2009) Detlef Weigel et al. GENOME BIOLOGY
- TOBFAC: the database of tobacco transcription factors
- (2008) Paul J Rushton et al. BMC BIOINFORMATICS
- Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili
- (2008) Norihiro Futamura et al. BMC GENOMICS
- A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis)
- (2008) Steven G Ralph et al. BMC GENOMICS
- Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding
- (2008) Steven G Ralph et al. BMC GENOMICS
- Relationship between metabolic and genomic diversity in sesame (Sesamum indicum L.)
- (2008) Hernán Laurentin et al. BMC GENOMICS
- Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila
- (2008) Teruaki Taji et al. BMC PLANT BIOLOGY
- TriMEDB: A database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae
- (2008) Keiichi Mochida et al. BMC PLANT BIOLOGY
- Application of TILLING and EcoTILLING as Reverse Genetic Approaches to Elucidate the Function of Genes in Plants and Animals
- (2008) N. Barkley et al. CURRENT GENOMICS
- Population, quantitative and comparative genomics of adaptation in forest trees
- (2008) David B Neale et al. CURRENT OPINION IN PLANT BIOLOGY
- Progress and challenges in protein structure prediction
- (2008) Yang Zhang CURRENT OPINION IN STRUCTURAL BIOLOGY
- Serial Analysis of Gene Expression (SAGE): 13 Years of Application in Research
- (2008) Sergey Anisimov CURRENT PHARMACEUTICAL BIOTECHNOLOGY
- SuperSAGE: A Modern Platform for Genome-Wide Quantitative Transcript Profiling
- (2008) Hideo Matsumura et al. CURRENT PHARMACEUTICAL BIOTECHNOLOGY
- Collection and Comparative Analysis of 1888 Full-length cDNAs from Wild Rice Oryza rufipogon Griff. W1943
- (2008) T. Lu et al. DNA RESEARCH
- Sequencing and Analysis of Approximately 40 000 Soybean cDNA Clones from a Full-Length-Enriched cDNA Library
- (2008) T. Umezawa et al. DNA RESEARCH
- Genome Structure of the Legume, Lotus japonicus
- (2008) S. Sato et al. DNA RESEARCH
- CE-MS in metabolomics
- (2008) Rawi Ramautar et al. ELECTROPHORESIS
- De novoassembly of thePseudomonas syringaepv.syringaeB728a genome using Illumina/Solexa short sequence reads
- (2008) Rhys A. Farrer et al. FEMS MICROBIOLOGY LETTERS
- Sequencing of natural strains of Arabidopsis thaliana with short reads
- (2008) S. Ossowski et al. GENOME RESEARCH
- Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
- (2008) H. Tang et al. GENOME RESEARCH
- Applications of High-Resolution Solid-State NMR Spectroscopy in Food Science
- (2008) Fabio Bertocchi et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Plant proteomics: Concepts, applications, and novel strategies for data interpretation
- (2008) Sacha Baginsky MASS SPECTROMETRY REVIEWS
- The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
- (2008) Ray Ming et al. NATURE
- Structural genomics: from genes to structures with valuable materials and many questions in between
- (2008) Brian G Fox et al. NATURE METHODS
- Genetic approaches to crop improvement: responding to environmental and population changes
- (2008) Shin Takeda et al. NATURE REVIEWS GENETICS
- The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions
- (2008) S. Fukuchi et al. NUCLEIC ACIDS RESEARCH
- OryGenesDB 2008 update: database interoperability for functional genomics of rice
- (2008) G. Droc et al. NUCLEIC ACIDS RESEARCH
- P3DB: a plant protein phosphorylation database
- (2008) J. Gao et al. NUCLEIC ACIDS RESEARCH
- ATTED-II provides coexpressed gene networks for Arabidopsis
- (2008) T. Obayashi et al. NUCLEIC ACIDS RESEARCH
- NCBI GEO: archive for high-throughput functional genomic data
- (2008) T. Barrett et al. NUCLEIC ACIDS RESEARCH
- InterPro: the integrative protein signature database
- (2008) S. Hunter et al. NUCLEIC ACIDS RESEARCH
- Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array
- (2008) A. Matsui et al. PLANT AND CELL PHYSIOLOGY
- Alterations in Detergent-Resistant Plasma Membrane Microdomains in Arabidopsis thaliana During Cold Acclimation
- (2008) Anzu Minami et al. PLANT AND CELL PHYSIOLOGY
- Large-scale phenotyping of transgenic tobacco plants (Nicotiana tabacum) to identify essential leaf functions
- (2008) Wolfgang Lein et al. PLANT BIOTECHNOLOGY JOURNAL
- Biochemical Networks and Epistasis Shape the Arabidopsis thaliana Metabolome
- (2008) H. C. Rowe et al. PLANT CELL
- Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis
- (2008) K. Yonekura-Sakakibara et al. PLANT CELL
- Mode of Inheritance of Primary Metabolic Traits in Tomato
- (2008) N. Schauer et al. PLANT CELL
- Metabolite annotations based on the integration of mass spectral information
- (2008) Yoko Iijima et al. PLANT JOURNAL
- The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access
- (2008) Hideki Goda et al. PLANT JOURNAL
- Systematic approaches to using the FOX hunting system to identify useful rice genes
- (2008) Youichi Kondou et al. PLANT JOURNAL
- Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics
- (2008) Kaoru Urano et al. PLANT JOURNAL
- MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites
- (2008) Fumio Matsuda et al. PLANT JOURNAL
- Identification of ubiquitinated proteins in Arabidopsis
- (2008) Concepción Manzano et al. PLANT MOLECULAR BIOLOGY
- GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses
- (2008) A. Yilmaz et al. PLANT PHYSIOLOGY
- Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains
- (2008) Kazuhiko Yamasaki et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant
- (2008) K. Nobuta et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Food Security Under Climate Change
- (2008) M. E. Brown et al. SCIENCE
- Synteny and Collinearity in Plant Genomes
- (2008) H. Tang et al. SCIENCE
- SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and cross-taxa utility
- (2008) Adam Heesacker et al. THEORETICAL AND APPLIED GENETICS
- High-density genetic map of durum wheat × wild emmer wheat based on SSR and DArT markers
- (2008) Zvi Peleg et al. THEORETICAL AND APPLIED GENETICS
- High-throughput genotyping with the GoldenGate assay in the complex genome of soybean
- (2008) David L. Hyten et al. THEORETICAL AND APPLIED GENETICS
- Metabolomics-assisted breeding: a viable option for crop improvement?
- (2008) Alisdair R. Fernie et al. TRENDS IN GENETICS
- At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
- (2008) Sascha Laubinger et al. GENOME BIOLOGY
- Decoding genes with coexpression networks and metabolomics – ‘majority report by precogs’
- (2007) Kazuki Saito et al. TRENDS IN PLANT SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started