The Diversity and Co-occurrence Patterns of N2-Fixing Communities in a CO2-Enriched Grassland Ecosystem

Nitrogen Fertilization Has a Stronger Effect on Soil Nitrogen-Fixing Bacterial Communities than Elevated Atmospheric CO2

(2014) Sean T. Berthrong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

nifHpyrosequencing reveals the potential for location-specific soil chemistry to influence N2-fixing community dynamics

(2014) Mónica M. Collavino et al.   ENVIRONMENTAL MICROBIOLOGY

A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria

(2014) John Christian Gaby et al.   Database-The Journal of Biological Databases and Curation

Microevolution from shock to adaptation revealed strategies improving ethanol tolerance and production in Thermoanaerobacter

(2013) Lu Lin et al.   Biotechnology for Biofuels

Elevated CO2 influences microbial carbon and nitrogen cycling

(2013) Meiying Xu et al.   BMC MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Bacteria and diatom co-occurrence patterns in microbial mats from polar desert streams

(2012) Lee F. Stanish et al.   ENVIRONMENTAL MICROBIOLOGY

No stimulation of nitrogen fixation by non-filamentous diazotrophs under elevated CO2 in the South Pacific

(2012) Cliff S. Law et al.   GLOBAL CHANGE BIOLOGY

Legumes select symbiosis island sequence variants inBradyrhizobium

(2012) MATTHEW A. PARKER   MOLECULAR ECOLOGY

Doubling of marine dinitrogen-fixation rates based on direct measurements

(2012) Tobias Großkopf et al.   NATURE

A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

(2012) John Christian Gaby et al.   PLoS One

Decade-long soil nitrogen constraint on the CO2 fertilization of plant biomass

(2012) Peter B. Reich et al.   Nature Climate Change

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Forest productivity under elevated CO2 and O3: positive feedbacks to soil N cycling sustain decade-long net primary productivity enhancement by CO2

(2011) Donald R. Zak et al.   ECOLOGY LETTERS

Increases in the flux of carbon belowground stimulate nitrogen uptake and sustain the long-term enhancement of forest productivity under elevated CO2

(2011) John E. Drake et al.   ECOLOGY LETTERS

A global census of nitrogenase diversity

(2011) John Christian Gaby et al.   ENVIRONMENTAL MICROBIOLOGY

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Nitrogen fixation by marine cyanobacteria

(2011) Jonathan P. Zehr   TRENDS IN MICROBIOLOGY

The Thermoanaerobacter Glycobiome Reveals Mechanisms of Pentose and Hexose Co-Utilization in Bacteria

(2011) Lu Lin et al.   PLoS Genetics

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2

(2010) Zhili He et al.   ECOLOGY LETTERS

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

Ecosystem response to elevated CO2 levels limited by nitrogen-induced plant species shift

(2010) J. Adam Langley et al.   NATURE

Rapid decay of unstable Leishmania mRNAs bearing a conserved retroposon signature 3′-UTR motif is initiated by a site-specific endonucleolytic cleavage without prior deadenylation

(2010) Michaela Müller et al.   NUCLEIC ACIDS RESEARCH

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response

(2008) Yunfeng Yang et al.   BMC GENOMICS

Diversity and expression of nitrogen fixation genes in bacterial symbionts of marine sponges

(2008) Naglaa M. Mohamed et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence for the functional significance of diazotroph community structure in soil

(2008) Shi-Fang Hsu et al.   ISME Journal