PATRIC: the Comprehensive Bacterial Bioinformatics Resource with a Focus on Human Pathogenic Species

Named Entity Recognition for Bacterial Type IV Secretion Systems

(2011) Sophia Ananiadou et al.   PLoS One

Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information

(2010) Yonqing Zhang et al.   BMC Medical Genomics

Data Integration for Dynamic and Sustainable Systems Biology Resources: Challenges and Lessons Learned

(2010) Daniel E. Sullivan et al.   CHEMISTRY & BIODIVERSITY

Anaplasma marginale Type IV Secretion System Proteins VirB2, VirB7, VirB11, and VirD4 Are Immunogenic Components of a Protective Bacterial Membrane Vaccine

(2010) E. L. Sutten et al.   INFECTION AND IMMUNITY

Phylogenomics Reveals a Diverse Rickettsiales Type IV Secretion System

(2010) J. J. Gillespie et al.   INFECTION AND IMMUNITY

Phylogeny of Gammaproteobacteria

(2010) K. P. Williams et al.   JOURNAL OF BACTERIOLOGY

The Comparative Toxicogenomics Database: update 2011

(2010) A. P. Davis et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets--10 years on

(2010) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs

(2010) C. Knox et al.   NUCLEIC ACIDS RESEARCH

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

The Human-Bacterial Pathogen Protein Interaction Networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis

(2010) Matthew D. Dyer et al.   PLoS One

GeneCards Version 3: the human gene integrator

(2010) M. Safran et al.   Database-The Journal of Biological Databases and Curation

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

Analysis ofRickettsia typhi-infected and uninfected cat flea (Ctenocephalides felis) midgut cDNA libraries: deciphering molecular pathways involved in host response toR. typhiinfection

(2009) S. M. Dreher-Lesnick et al.   INSECT MOLECULAR BIOLOGY

Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle

(2009) A. R. Wattam et al.   JOURNAL OF BACTERIOLOGY

A Typhus Group-Specific Protease Defies Reductive Evolution in Rickettsiae

(2009) N. C. Ammerman et al.   JOURNAL OF BACTERIOLOGY

NCBI Peptidome: a new repository for mass spectrometry proteomics data

(2009) Li Ji et al.   NUCLEIC ACIDS RESEARCH

The Proteomics Identifications database: 2010 update

(2009) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Gene Expression Atlas at the European Bioinformatics Institute

(2009) Misha Kapushesky et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2009) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

FIGfams: yet another set of protein families

(2009) Folker Meyer et al.   NUCLEIC ACIDS RESEARCH

An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

(2009) Joseph J. Gillespie et al.   PLoS One

Genome Degradation in Brucella ovis Corresponds with Narrowing of Its Host Range and Tissue Tropism

(2009) Renee M. Tsolis et al.   PLoS One

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

The National Center for Biotechnology Information's Protein Clusters Database

(2008) William Klimke et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Genome Sequence of Brucella abortus Vaccine Strain S19 Compared to Virulent Strains Yields Candidate Virulence Genes

(2008) Oswald R. Crasta et al.   PLoS One

Rickettsia Phylogenomics: Unwinding the Intricacies of Obligate Intracellular Life

(2008) Joseph J. Gillespie et al.   PLoS One

Surveillance Sans Frontières: Internet-Based Emerging Infectious Disease Intelligence and the HealthMap Project

(2008) John S Brownstein et al.   PLOS MEDICINE