The Proteomics Identifications database: 2010 update

BioMart – biological queries made easy

(2009) Damian Smedley et al.   BMC GENOMICS

NCBI Peptidome: a new public repository for mass spectrometry peptide identifications

(2009) Douglas J Slotta et al.   NATURE BIOTECHNOLOGY

Credit where credit is overdue

(2009)   NATURE BIOTECHNOLOGY

PRIDE Converter: making proteomics data-sharing easy

(2009) Harald Barsnes et al.   NATURE BIOTECHNOLOGY

Database on Demand - An online tool for the custom generation of FASTA-formatted sequence databases

(2009) Florian Reisinger et al.   PROTEOMICS

A guide to the Proteomics Identifications Database proteomics data repository

(2009) Juan Antonio Vizcaíno et al.   PROTEOMICS

Recent developments in public proteomic MS repositories and pipelines

(2009) Jennifer A. Mead et al.   PROTEOMICS

Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes

(2009) Sabine P Schrimpf et al.   PLOS BIOLOGY

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

(2008) Eric W Deutsch et al.   EMBO REPORTS

Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations

(2008) G. E. Merrihew et al.   GENOME RESEARCH

Thou shalt share your data

(2008)   NATURE METHODS

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries

(2008) R. G. Cote et al.   NUCLEIC ACIDS RESEARCH

Human Proteinpedia: a unified discovery resource for proteomics research

(2008) Kumaran Kandasamy et al.   NUCLEIC ACIDS RESEARCH

The Rat Genome Database 2009: variation, ontologies and pathways

(2008) M. R. Dwinell et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2009

(2008) T. J. P. Hubbard et al.   NUCLEIC ACIDS RESEARCH

The Universal Protein Resource (UniProt) 2009

(2008)   NUCLEIC ACIDS RESEARCH

Reactome knowledgebase of human biological pathways and processes

(2008) L. Matthews et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

7thHUPO World Congress of Proteomics: Launching the Second Phase of the HUPO Plasma Proteome Project (PPP-2) 16-20 August 2008, Amsterdam, The Netherlands

(2008) Gilbert S. Omenn et al.   PROTEOMICS

Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics

(2008) K. Baerenfaller et al.   SCIENCE

Analyzing Large-Scale Proteomics Projects with Latent Semantic Indexing

(2007) Sebastian Klie et al.   JOURNAL OF PROTEOME RESEARCH