NetMHCstab- predicting stability of peptide-MHC-I complexes; impacts for cytotoxic T lymphocyte epitope discovery

A Comparative Study of HLA Binding Affinity and Ligand Diversity: Implications for Generating Immunodominant CD8+ T Cell Responses

(2014) X. Rao et al.   JOURNAL OF IMMUNOLOGY

Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach

(2012) Massimo Andreatta et al.   BIOINFORMATICS

Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity

(2012) Mikkel Harndahl et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

(2012) Martin Christen Frølund Thomsen et al.   NUCLEIC ACIDS RESEARCH

Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy?

(2011) Claus Lundegaard et al.   Expert Review of Vaccines

NetMHCcons: a consensus method for the major histocompatibility complex class I predictions

(2011) Edita Karosiene et al.   IMMUNOGENETICS

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

HLArestrictor—a tool for patient-specific predictions of HLA restriction elements and optimal epitopes within peptides

(2010) Malene Erup Larsen et al.   IMMUNOGENETICS

NetCTLpan: pan-specific MHC class I pathway epitope predictions

(2010) Thomas Stranzl et al.   IMMUNOGENETICS

Major histocompatibility complex class I binding predictions as a tool in epitope discovery

(2010) Claus Lundegaard et al.   IMMUNOLOGY

Real-time, high-throughput measurements of peptide–MHC-I dissociation using a scintillation proximity assay

(2010) Mikkel Harndahl et al.   JOURNAL OF IMMUNOLOGICAL METHODS

The Immune Epitope Database 2.0

(2009) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

NetMHCpan, a method for MHC class I binding prediction beyond humans

(2008) Ilka Hoof et al.   IMMUNOGENETICS

The peptide-binding specificity of HLA-A*3001 demonstrates membership of the HLA-A3 supertype

(2008) Kasper Lamberth et al.   IMMUNOGENETICS