Making a long story short: noncoding RNAs and chromosome change

MicroRNA29a regulates the expression of the nuclear oncogene Ski

(2011) S. Teichler et al.   BLOOD

MicroRNA profiling in cancer: Table 1

(2011) Reinhold Munker et al.   CLINICAL SCIENCE

An autosomal locus that controls chromosome-wide replication timing and mono-allelic expression

(2011) Eric P. Stoffregen et al.   HUMAN MOLECULAR GENETICS

Chromosome Size in Diploid Eukaryotic Species Centers on the Average Length with a Conserved Boundary

(2011) X. Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

BRCA1 tumour suppression occurs via heterochromatin-mediated silencing

(2011) Quan Zhu et al.   NATURE

Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site

(2011) Anne Letessier et al.   NATURE

53BP1 nuclear bodies form around DNA lesions generated by mitotic transmission of chromosomes under replication stress

(2011) Claudia Lukas et al.   NATURE CELL BIOLOGY

SUMOylation promotes de novo targeting of HP1α to pericentric heterochromatin

(2011) Christèle Maison et al.   NATURE GENETICS

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

(2011) Tiffany Hung et al.   NATURE GENETICS

Regulation of X-chromosome inactivation by the X-inactivation centre

(2011) Sandrine Augui et al.   NATURE REVIEWS GENETICS

WDHD1 modulates the post-transcriptional step of the centromeric silencing pathway

(2011) Chia-Ling Hsieh et al.   NUCLEIC ACIDS RESEARCH

Aberrant Overexpression of Satellite Repeats in Pancreatic and Other Epithelial Cancers

(2011) D. T. Ting et al.   SCIENCE

AID Induces Double-Strand Breaks at Immunoglobulin Switch Regions and c-MYC Causing Chromosomal Translocations in Yeast THO Mutants

(2011) José F. Ruiz et al.   PLoS Genetics

Expression of P. falciparum var Genes Involves Exchange of the Histone Variant H2A.Z at the Promoter

(2011) Michaela Petter et al.   PLoS Pathogens

A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs

(2011) Kate M Broadbent et al.   GENOME BIOLOGY

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

(2011) Marilyn B Renfree et al.   GENOME BIOLOGY

Chromosomes, Conflict, and Epigenetics: Chromosomal Speciation Revisited

(2010) Judith D. Brown et al.   Annual Review of Genomics and Human Genetics

Discovery of recurrent t(6;7)(p25.3;q32.3) translocations in ALK-negative anaplastic large cell lymphomas by massively parallel genomic sequencing

(2010) A. L. Feldman et al.   BLOOD

A Strand-Specific Burst in Transcription of Pericentric Satellites Is Required for Chromocenter Formation and Early Mouse Development

(2010) Aline.V. Probst et al.   DEVELOPMENTAL CELL

Epigenetic engineering shows H3K4me2 is required for HJURP targeting and CENP-A assembly on a synthetic human kinetochore

(2010) Jan H Bergmann et al.   EMBO JOURNAL

Chromatin-Mediated Epigenetic Regulation in the Malaria Parasite Plasmodium falciparum

(2010) Liwang Cui et al.   EUKARYOTIC CELL

TERRA biogenesis, turnover and implications for function

(2010) Sascha Feuerhahn et al.   FEBS LETTERS

Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila

(2010) M. von Grotthuss et al.   GENOME RESEARCH

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

(2010) Shivendra Kishore et al.   HUMAN MOLECULAR GENETICS

3D imaging of telomeres and nuclear architecture: An emerging tool of 3D nano-morphology-based diagnosis

(2010) Hans Knecht et al.   JOURNAL OF CELLULAR PHYSIOLOGY

CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR

(2010) Mikel Zaratiegui et al.   NATURE

Systematic identification of fragile sites via genome-wide location analysis of γ-H2AX

(2010) Rachel K Szilard et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans

(2010) Ryan J Taft et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Determinants of R-loop formation at convergent bidirectionally transcribed trinucleotide repeats

(2010) Kaalak Reddy et al.   NUCLEIC ACIDS RESEARCH

The Two Stem Cell MicroRNA Gene Clusters C19MC and miR-371-3 Are Activated by Specific Chromosomal Rearrangements in a Subgroup of Thyroid Adenomas

(2010) Volkhard Rippe et al.   PLoS One

siRNA–Mediated Methylation of Arabidopsis Telomeres

(2010) Jan Vrbsky et al.   PLoS Genetics

DNA Binding of Centromere Protein C (CENPC) Is Stabilized by Single-Stranded RNA

(2010) Yaqing Du et al.   PLoS Genetics

Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary novelty

(2009) Mark S Longo et al.   BMC GENOMICS

Frodos Found: Behold the CENP-A “Ring” Bearers

(2009) Barbara G. Mellone et al.   CELL

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

The long and the short of noncoding RNAs

(2009) Christopher A Brosnan et al.   CURRENT OPINION IN CELL BIOLOGY

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)

(2009) Yong Sun Lee et al.   GENES & DEVELOPMENT

TERRA RNA Binding to TRF2 Facilitates Heterochromatin Formation and ORC Recruitment at Telomeres

(2009) Zhong Deng et al.   MOLECULAR CELL

Tiny RNAs associated with transcription start sites in animals

(2009) Ryan J Taft et al.   NATURE GENETICS

LINE Retrotransposon RNA Is an Essential Structural and Functional Epigenetic Component of a Core Neocentromeric Chromatin

(2009) Anderly C. Chueh et al.   PLoS Genetics

A new class of retroviral and satellite encoded small RNAs emanates from mammalian centromeres

(2008) Dawn M. Carone et al.   CHROMOSOMA

Segmental duplications and evolutionary plasticity at tumor chromosome break-prone regions

(2008) E. Darai-Ramqvist et al.   GENOME RESEARCH

Hypomethylation of subtelomeric regions in ICF syndrome is associated with abnormally short telomeres and enhanced transcription from telomeric regions

(2008) Shiran Yehezkel et al.   HUMAN MOLECULAR GENETICS

A Human snoRNA with MicroRNA-Like Functions

(2008) Christine Ender et al.   MOLECULAR CELL

Meiotic Recombination Hotspots of Fission Yeast Are Directed to Loci that Express Non-Coding RNA

(2008) Wayne P. Wahls et al.   PLoS One

Heterochromatin and RNAi Are Required to Establish CENP-A Chromatin at Centromeres

(2008) H. D. Folco et al.   SCIENCE

Spt2p Defines a New Transcription-Dependent Gross Chromosomal Rearrangement Pathway

(2008) Nilabja Sikdar et al.   PLoS Genetics

Pericentric heterochromatin: dynamic organization during early development in mammals

(2007) Aline V. Probst et al.   DIFFERENTIATION