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Microbiology
Jiun-Nong Lin, Chung-Hsu Lai, Shang-Yi Lin, Ching-Chi Lee, Nan-Yao Lee, Po-Yu Liu, Chih-Hui Yang, Yi-Han Huang
Summary: This study evaluated the impact of intraspecific diversity among the multiple copies of the 16S rRNA gene on the accuracy of species identification in the genus Elizabethkingia. The results suggest that 16S rRNA gene sequencing should not be considered the gold standard for the accurate identification of Elizabethkingia species.
MICROBIOLOGY SPECTRUM
(2022)
Article
Biochemistry & Molecular Biology
Rui Huang, Pan Liu, Yiguang Bai, Jieqiong Huang, Rui Pan, Huihua Li, Yeping Su, Quan Zhou, Ruixin Ma, Shaohui Zong, Gaofeng Zeng
Summary: This study aimed to investigate the relationship between gut microbiota and osteoporosis by reviewing previous research findings. Through comprehensive analysis, changes in gut microbiota were found to be correlated with osteoporosis, with potential regional differences.
JOURNAL OF ZHEJIANG UNIVERSITY-SCIENCE B
(2022)
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Plant Sciences
Chakrit Bunyoo, Peerapat Roongsattham, Sirikorn Khumwan, Juthaporn Phonmakham, Passorn Wonnapinij, Arinthip Thamchaipenet
Summary: This study investigated the structure and diversity of duckweed-associated bacteria (DAB) among four duckweed subtypes under natural and nutrient-deficient conditions using 16S rRNA amplicon sequencing. The results showed that Proteobacteria was the dominant phylum in duckweed samples. A total of 24 microbial genera were identified as a core microbiome, with consistent proportions across all duckweed subtypes. The diversity of microbial communities decreased after nutrient-deficient stress, but the relative abundance of certain genera significantly increased. Functional prediction of the metagenome data revealed enrichment of essential pathways involved in DAB colonization and biodegradation under stress condition.
Article
Microbiology
Gleyciane Machado da Costa, Savio Souza Costa, Rafael Azevedo Barauna, Bruno Pureza Castilho, Izabel Cruz Pinheiro, Artur Silva, Ana Paula Schaan, Andrea Ribeiro-dos-Santos, Diego Assis das Gracas
Summary: The study reveals that human activities, such as the construction of a highway, have impacted the microbial communities in the Amazonian mangroves and resulted in a loss of biodiversity.
Article
Environmental Sciences
Adithya Govindarajan, Mary Crum, Jay Adolacion, Amin Kiaghadi, Edgar Acuna-Gonzalez, Hanadi S. Rifai, Richard C. Willson
Summary: This study provides a description of sediment microbial communities in the Houston Ship Channel-Galveston Bay estuary after Hurricane Harvey. The presence and abundance of specific bacterial and archaeal taxa indicate pollutant inputs and the study also observed microorganisms involved in the biodegradation of xenobiotics. The spatial occurrence of a specific degrader of persistent polychlorinated compounds is explained by sediment properties and contaminant concentrations.
MARINE POLLUTION BULLETIN
(2022)
Article
Biology
Modhi O. Alotaibi, Afrah E. Mohammed, Kamal H. Eltom
Summary: The current study aimed to assess possible changes in bacterial communities of the water at Wadi Namar Lake. The results showed variations in bacterial species and abundance between different locations, which were related to surrounding environmental factors. These findings are important for planning environmental protection and future restoration of affected ecosystems.
SAUDI JOURNAL OF BIOLOGICAL SCIENCES
(2022)
Article
Microbiology
Marcelle Muniz Barreto, Maren Ziegler, Alexander Venn, Eric Tambutte, Didier Zoccola, Sylvie Tambutte, Denis Allemand, Chakkiath Paul Antony, Christian R. Voolstra, Manuel Aranda
Summary: Ocean warming and acidification, direct consequences of climate change, affect coral reefs worldwide. This study found that ocean acidification has stronger effects on the active microbial community associated with corals, compared to the resident community. The results suggest that rDNA- and rRNA-based sequencing are complementary tools for investigating the effects of environmental change on microbial assemblage structure and activity.
FRONTIERS IN MICROBIOLOGY
(2021)
Article
Biotechnology & Applied Microbiology
Marcel Suleiman, Francesca Demaria, Cristina Zimmardi, Boris Alexander Kolvenbach, Philippe Francois-Xavier Corvini
Summary: Pharmaceuticals accumulation in the environment is a concern for our planet and health. Little is known about the biodegradation capacity of microbial communities for multiple micropollutants. This study demonstrates the feasibility of cultivating stable microbial communities capable of degrading a mixture of highly concentrated pharmaceuticals.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2023)
Article
Environmental Sciences
Bo Zhang, Zhi-Ling Li, Cai-Hua Bai, Jing-Lan Liu, Jun Nan, Di Cao, Li-Wei Li
Summary: This study analyzed 10 groundwater samples for their nitrate, nitrite, COD, and sulfate concentrations, and characterized their microbial compositions using 16 S rRNA based high-throughput sequencing methods. The results showed that the microbial structures of groundwater samples with nitrate concentrations higher than the maximum contamination level (MCL) were significantly different from those with lower nitrate concentrations. Furthermore, JG30-KM-CM45, Sphingomonas, and Rhodococcus were found to be closely correlated with nitrate concentration.
ENVIRONMENTAL RESEARCH
(2023)
Article
Microbiology
Shu Li, Bao Qi, Wan Wang, Xueyan Peng, Andrey A. Gontcharov, Bao Liu, Qi Wang, Yu Li
Summary: The study identified the bacterial communities associated with the plasmodia of six myxomycetes species and found that while the bacterial composition varied among species, there was a high similarity in the functional composition of the bacterial communities. The enrichment for gram-negative and aerobic bacteria in plasmodia suggests that myxomycetes may selectively recruit certain bacteria from the environment.
Article
Biotechnology & Applied Microbiology
L. R. Makrakis, V. C. Oliveira, E. S. Santos, C. Nascimento, E. Watanabe, A. B. Ribeiro, C. H. Silva-Lovato
Summary: This study evaluated the microbiota of ocular prostheses and anophthalmic sockets of six individuals using 16S rRNA sequencing. The most frequent genera in both sites were Fusobacterium, Staphylococcus, Prevotella, and Streptococcus. The anophthalmic socket had a higher microbial abundance, but both sites had similar microbiota with high diversity and low dominance among the genera.
Article
Environmental Sciences
Luana Agostini, Julio Cezar Fornazier Moreira, Amanda Goncalves Bendia, Maria Carolina Pezzo Kmit, Linda Gwen Waters, Marina Ferreira Mourao Santana, Paulo Yukio Gomes Sumida, Alexander Turra, Vivian Helena Pellizari
Summary: The study assessed the colonization of microbial communities on plastic substrates in deep-sea environments and found that the type of substrate strongly influenced microbial composition and structure. While some taxa were shared among different plastics, specific groups were also observed for each plastic type. The core microbiome identified was composed of low abundance taxa with known plastic-degradation capabilities. Additionally, bacterial strains with reported plastic-degradation abilities were isolated, suggesting the presence of potentially active microbial members involved in plastic degradation in the deep sea.
SCIENCE OF THE TOTAL ENVIRONMENT
(2021)
Article
Microbiology
Markus Haber, Dalit Roth Rosenberg, Maya Lalzar, Ilia Burgsdorf, Kumar Saurav, Regina Lionheart, Yoav Lehahn, Dikla Aharonovich, Laura Gomez-Consarnau, Daniel Sher, Michael D. Krom, Laura Steindler
Summary: This study investigated the temporal and spatial patterns of bacterial and archaeal communities in the Eastern Mediterranean Sea. The results showed that oligotrophic bacteria dominated the microbial community throughout the year, and seasons significantly affected the community composition. Although the dominant taxa remained consistent over the two-year sampling period, their dominance varied. While station location did not have an overall effect on the microbial community, the most coastal site differed significantly from the offshore stations in certain seasons.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Environmental Sciences
Xiao Xiao, Ya-Li Zhang, Zi-An Zhou, Fan Wu, Hou-Feng Wang, Xin Zong
Summary: This study investigates how microbial communities in lake sediments respond to different concentrations of PAC and finds that PAC treatment can greatly affect the microbial diversity and structure in lake sediments, as well as the functional pathways. The results highlight the potential impact of chemical phosphorus removing reagents on the environment.
SCIENCE OF THE TOTAL ENVIRONMENT
(2023)
Article
Biochemistry & Molecular Biology
Bianca R. P. Brown, Jacob R. Goheen, Seth D. Newsome, Robert M. Pringle, Todd M. Palmer, Leo M. Khasoha, Tyler R. Kartzinel
Summary: Analysing the gut microbiomes of 14 sympatric small mammal species in an African savanna, it was found that the differences in gut microbiomes were correlated with the phylogenetic relatedness of the hosts, with stronger patterns observed at deeper levels of the phylogeny. Additionally, the gut microbiome diversity and composition were also correlated with the body size, dietary breadth, and dietary overlap of the hosts.
Article
Environmental Sciences
Chunbo Hao, Pengfei Wei, Lixin Pei, Zerui Du, Yi Zhang, Yanchun Lu, Hailiang Dong
ENVIRONMENTAL POLLUTION
(2017)
Article
Environmental Sciences
Yangjian Cheng, Li Zhang, Xiaojing Bian, Hongyang Zuo, Hailiang Dong
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
(2018)
Article
Microbiology
Geng Wu, Liuqin Huang, Hongchen Jiang, Yue'e Peng, Wei Guo, Ziyu Chen, Weiyu She, Qinghai Guo, Hailiang Dong
FRONTIERS IN MICROBIOLOGY
(2017)
Article
Nanoscience & Nanotechnology
Liang Bian, Hai-long Li, Yu-jin Li, Jia-nan Nie, Fa-qin Dong, Hai-liang Dong, Mian-xin Song, Li-sheng Wang, Tian-liang Zhou, Xiao-yan Zhang, Xin-xi Li, Lei Xie
NANOSCALE RESEARCH LETTERS
(2017)
Article
Geochemistry & Geophysics
Liuqin Huang, Can Feng, Hongchen Jiang, Hailiang Dong, Zizhang Liu, Qiang Zeng, Xi Wang, Li Zhang
Article
Geochemistry & Geophysics
Limin Zhang, Hailiang Dong, Yan Liu, Liang Bian, Xi Wang, Ziqi Zhou, Ying Huang
Article
Microbiology
Shreya Srivastava, Brandon R. Briggs, Hailiang Dong
ENVIRONMENTAL MICROBIOLOGY
(2018)
Article
Biochemistry & Molecular Biology
Shiping Wei, Hongpeng Cui, Youhai Zhu, Zhenquan Lu, Shouji Pang, Shuai Zhang, Hailiang Dong, Xin Su
Article
Engineering, Environmental
Xiaolei Liu, Hailiang Dong, Xuewei Yang, Libor Kovarik, Yu Chen, Qiang Zeng
JOURNAL OF HAZARDOUS MATERIALS
(2018)
Article
Geochemistry & Geophysics
Gaoyuan Li, Li Li, Rafael Tarozo, William M. Longo, Karen J. Wang, Hailiang Dong, Yongsong Huang
ORGANIC GEOCHEMISTRY
(2018)
Article
Geosciences, Multidisciplinary
Chuanlun Zhang, Jian Lin, Sanzhong Li, Hailiang Dong, Fengping Wang, Shucheng Xie
SCIENCE CHINA-EARTH SCIENCES
(2018)
Article
Microbiology
Weiguo Hou, Shang Wang, Brandon R. Briggs, Gaoyuan Li, Wei Xie, Hailiang Dong
FRONTIERS IN MICROBIOLOGY
(2018)
Article
Materials Science, Ceramics
Jianan Nie, Liang Bian, Xiaobin Gu, Xiaoqiang Jiang, Hailiang Dong, Mianxin Song, Faqin Dong, Limin Zhang, Huichao He, Ping He, Nelson Belzile, Yuwei Chen, Shuhui Sun
CERAMICS INTERNATIONAL
(2018)
Article
Environmental Sciences
Hongpeng Cui, Xin Su, Fang Chen, Melanie Holland, Shengxiong Yang, Jinqiang Liang, Hailiang Dong, Weiguo Hou
MARINE ENVIRONMENTAL RESEARCH
(2019)
Article
Geochemistry & Geophysics
Hongping He, Shichao Ji, Qi Tao, Jianxi Zhu, Tianhu Chen, Xiaoliang Liang, Zhaohui Li, Hailiang Dong
AMERICAN MINERALOGIST
(2017)