4.3 Article

Testate Amoebae and Nutrient Cycling with Particular Reference to Soils

期刊

GEOMICROBIOLOGY JOURNAL
卷 27, 期 6-7, 页码 520-533

出版社

TAYLOR & FRANCIS INC
DOI: 10.1080/01490451003702925

关键词

biogeochemical cycling; biomineralization; testate amoebae

向作者/读者索取更多资源

We asked the following question: Is the lack of attention given to testate amoebae, and other protists, in studies of nutrient cycling justified by their relative unimportance or are we ignoring key players in nutrient cycling and other ecological processes? We review various aspects of the ecology of testates relevant to their role in nutrient cycling. These include their food sources, their population sizes and production ecology, the rate of test breakdown ( and hence recycling of material from testates to other organisms) and non-feeding interactions with other organisms (e.g., mychorrhizae). Much of the relevant published literature dates from the late 1960s to the early 1980s, presumably due to the interest in production ecology and other aspects of ecosystem ecology at this time. There was a reduction in relevant research during the 1980s and 1990s, but there has recently been signs of renewed interest in this area. In addition to reviewing the past literature we suggest new speculations about the role of the evolution of grasses and the rise of the euglyphid testates-mediated by the silica cycle. Our main conclusion is that we currently do not know enough to answer our question about their potential importance! However, there are hints in these data which suggest that testates may be important and should be targeted by future research. Some of the main questions that should be targeted are outlined.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.3
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Plant Sciences

Environmental drivers ofSphagnumgrowth in peatlands across the Holarctic region

Fia Bengtsson, Hakan Rydin, Jennifer L. Baltzer, Luca Bragazza, Zhao-Jun Bu, Simon J. M. Caporn, Ellen Dorrepaal, Kjell Ivar Flatberg, Olga Galanina, Mariusz Galka, Anna Ganeva, Irina Goia, Nadezhda Goncharova, Michal Hajek, Akira Haraguchi, Lorna I. Harris, Elyn Humphreys, Martin Jirousek, Katarzyna Kajukalo, Edgar Karofeld, Natalia G. Koronatova, Natalia P. Kosykh, Anna M. Laine, Mariusz Lamentowicz, Elena Lapshina, Juul Limpens, Maiju Linkosalmi, Jin-Ze Ma, Marguerite Mauritz, Edward A. D. Mitchell, Tariq M. Munir, Susan M. Natali, Rayna Natcheva, Richard J. Payne, Dmitriy A. Philippov, Steven K. Rice, Sean Robinson, Bjorn J. M. Robroek, Line Rochefort, David Singer, Hans K. Stenoien, Eeva-Stiina Tuittila, Kai Vellak, James Michael Waddington, Gustaf Granath

Summary: The study investigated the impact of global and local environmental factors on the growth and carbon uptake of the Sphagnum genus across 99 Holarctic peatlands. Results showed that climate, nitrogen deposition, water table depth, and vascular plant cover had significant effects on Sphagnum growth, with different responses observed between species. Indirect effects, such as the influence of vascular plant cover on water table depth, nitrogen deposition, precipitation, and temperature, were also important in shaping Sphagnum growth patterns.

JOURNAL OF ECOLOGY (2021)

Article Environmental Sciences

Residues of neonicotinoids in soil, water and people's hair: A case study from three agricultural regions of the Philippines

Jean-Marc Bonmatin, Edward A. D. Mitchell, Gaetan Glauser, Elizabeth Lumawig-Heitzman, Florencia Claveria, Maarten Bijleveld van Lexmond, Kumiko Taira, Francisco Sanchez-Bayo

Summary: Residues of neonicotinoids were found in soil, water, and people's hair samples in three agricultural regions of the Philippines, indicating environmental and human contamination. The study revealed a strong correlation between hair residue levels and concentrations of neonicotinoids in soil, suggesting a potential source of human exposure to these pesticides.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Article Geography, Physical

Developing a continental-scale testate amoeba hydrological transfer function for Asian peatlands

Yangmin Qin, Hongkai Li, Yuri Mazei, Irina Kurina, Graeme T. Swindles, Anatoly Bobrov, Andrey N. Tsyganov, Yansheng Gu, Xianyu Huang, Jiantao Xue, Mariusz Lamentowicz, Katarzyna Marcisz, Thomas Roland, Richard J. Payne, Edward A. D. Mitchell, Shucheng Xie

Summary: Testate amoebae are commonly used as proxy indicators in ecological and palaeoecological studies, but the diversity and ecology of testate amoebae in Asian peatlands are poorly documented. This study compiled data from 42 peatlands across Asia and developed hydrological transfer functions for water table depth estimation, showing comparable predictive capability to models in Europe and North America. The developed transfer function can be used for palaeohydrological reconstructions in boreal to subtropical peatlands in Asia.

QUATERNARY SCIENCE REVIEWS (2021)

Article Microbiology

Soil protist function varies with elevation in the Swiss Alps

Florent Mazel, Lucie Malard, Helene Niculita-Hirzel, Erika Yashiro, Heidi K. Mod, Edward A. D. Mitchell, David Singer, Aline Buri, Eric Pinto, Nicolas Guex, Enrique Lara, Antoine Guisan

Summary: Protists play key trophic functions in soil and their contributions vary across large environmental gradients. In the Swiss Alps, the dominance of consumers in soil decreases at higher elevations, with a corresponding increase in the ratio of parasites. The taxonomic composition of protists also varies with elevation and soil pH, influencing their functional composition along the elevational gradient.

ENVIRONMENTAL MICROBIOLOGY (2022)

Article Microbiology

A reassessment of testate amoebae diversity in Tierra del Fuego peatlands: Implications for large scale inferences

Luciana Burdman, Gabriela Mataloni, Edward A. D. Mitchell, Enrique Lara

Summary: Testate amoebae, a diverse group of shelled protists, have been found to have higher diversity in Tierra del Fuego peatlands compared to Northern Hemisphere peatlands. The discovery of numerous new species in this region suggests that the number of Gondwanian and Neotropical endemic testate amoeba may be substantially higher than currently known. Additionally, previous reports of Holarctic taxa in Tierra del Fuego may be due to forcing the identification of morphotypes to descriptions in literature from other regions.

EUROPEAN JOURNAL OF PROTISTOLOGY (2021)

Article Ecology

Niche Conservatism Drives the Elevational Diversity Gradient in Major Groups of Free-Living Soil Unicellular Eukaryotes

Leonardo D. Fernandez, Christophe V. W. Seppey, David Singer, Bertrand Fournier, Dylan Tatti, Edward A. D. Mitchell, Enrique Lara

Summary: The study tracked the phylogenetic signal of common soil protists along an elevational gradient in Switzerland, revealing different adaptation strategies to climate change among different groups of protists. The results suggest that soil protists face evolutionary constraints in colder climates, limiting their distribution and adaptation. This niche conservatism potentially drives the biogeography and macroecology of soil protists along climatic gradients.

MICROBIAL ECOLOGY (2022)

Article Environmental Sciences

Multiple neonicotinoids in children's cerebro-spinal fluid, plasma, and urine

Bernard Laubscher, Manuel Diezi, Raffaele Renella, Edward A. D. Mitchell, Alexandre Aebi, Matthieu Mulot, Gaetan Glauser

Summary: This study revealed the presence of multiple neonicotinoids and their metabolites in the cerebrospinal fluid, plasma, and urine of children. The contamination by multiple neonicotinoids is a potential hazard not only for non-target insects like bees but also for children.

ENVIRONMENTAL HEALTH (2022)

Article Microbiology

Certesella larai (Amoebozoa: Arcellinida: Hyalospheniformes) a new soil testate amoeba species from the Dominican Republic and Chile challenges the definition of genera Certesella and Porosia

Anatoly Bobrov, Clement Duckert, Edward A. D. Mitchell

Summary: The article describes a new species of Certesella genus, Certesella larai, found in Sphagnum mosses and forest litter samples collected in the Dominican Republic and Chile. Although the new species shares characteristics with Porosia and Certesella genera, it also shows distinct differences, suggesting a need for molecular analyses to confirm its phylogenetic position. The presence of this new species in two distant regions - Caribbean and central Chile - suggests a likely widespread distribution, highlighting the need for more systematic sampling efforts to document the full taxonomic diversity of soil protists.

ACTA PROTOZOOLOGICA (2021)

Article Microbiology

Distribution of soil testate amoeba assemblages along an elevation gradient on Mount Fuji (Japan)

Andrey N. Tsyganov, Anatoly A. Bobrov, Satoshi D. Shimano, Edward A. D. Mitchell, Yasuo Hagiwara, Adeline A. J. Wall, Natalia G. Mazei, Viktor A. Chernyshov, Manfred Wanner, Yuantan Zhong, Yoichiro Sogame, Yuri A. Mazei

Summary: The study investigated the species diversity and composition of soil- and moss-dwelling testate amoeba assemblages along an elevation gradient on Mount Fuji. The results showed that the species composition of testate amoeba assemblages was strongly influenced by elevation, with vegetation type playing a significant role in mediating this effect.

EUROPEAN JOURNAL OF PROTISTOLOGY (2022)

Article Soil Science

Comparative analysis of diversity and environmental niches of soil bacterial, archaeal, fungal and protist communities reveal niche divergences along environmental gradients in the Alps

Lucie A. Malard, Heidi K. Mod, Nicolas Guex, Olivier Broennimann, Erika Yashiro, Enrique Lara, Edward A. D. Mitchell, Helene Niculita-Hirzel, Antoine Guisan

Summary: This study found that edaphic properties were the most important drivers of community diversity and composition for all microbial groups, with microbial taxa showing increased specialization in highly selective environments.

SOIL BIOLOGY & BIOCHEMISTRY (2022)

Article Geosciences, Multidisciplinary

Late-Glacial and Holocene Lake-Level Fluctuations on the Kenai Lowland, Reconstructed from Satellite-Fen Peat Deposits and Ice-Shoved Ramparts, Kenai Peninsula, Alaska

Edward E. Berg, Darrell S. Kaufman, R. Scott Anderson, Gregory C. Wiles, Thomas V. Lowell, Edward A. D. Mitchell, Feng Sheng Hu, Alan Werner

Summary: Recent decades of warming climate in southern Alaska have led to drying wetlands and falling lake levels. This study examines the historical fluctuations in lake levels, including high and low stands, and the impact of these changes on vegetation succession. The research also highlights how data from peat records in satellite fens can be used to reconstruct paleo-lake levels.

QUATERNARY (2022)

Article Biochemistry & Molecular Biology

Contemporary issues, current best practice and ways forward in soil protist ecology

Stefan Geisen, Enrique Lara, Edward Mitchell

Summary: Soil protists are being increasingly studied due to their diversity and importance in ecosystems, but many of these studies lack depth in knowledge and use incorrect terms and interpretations. This paper aims to help non-experts avoid common errors in studying soil protists, providing suggestions for appropriate terms and highlighting challenges in interpreting data. It warns against relying on incomplete reference databases and drawing causal inferences without experimental confirmation and understanding of taxa biology. The authors envision this work to contribute to a better understanding of soil ecology by facilitating the inclusion of protists in ecological analyses.

MOLECULAR ECOLOGY RESOURCES (2023)

Article Biochemistry & Molecular Biology

Soil filtration-sedimentation improves shelled protist recovery in eukaryotic eDNA surveys

Guillaume Lentendu, Estelle P. Bruni, Claudine Ah-Peng, Junichi Fujinuma, Yasuhiro Kubota, Juan Lorite, Julio Penas, Shuyin Huang, Dominique Strasberg, Pascal Vittoz, Edward A. D. Mitchell

Summary: By using a filtration-sedimentation method, we improved the recovery of soil protist environmental DNA while reducing the co-extraction of non-target organisms. The method showed a 2-3 fold enrichment in shelled protists, with a decrease in fungi and plants. The findings suggest that this method can significantly enhance the resolution of soil protist diversity estimation in eDNA metabarcoding studies.

MOLECULAR ECOLOGY RESOURCES (2023)

Article Ecology

Soil Micro-eukaryotic Diversity Patterns Along Elevation Gradient Are Best Estimated by Increasing the Number of Elevation Steps Rather than Within Elevation Band Replication

Shuyin Huang, Guillaume Lentendu, Junichi Fujinuma, Takayuki Shiono, Yasuhiro Kubota, Edward A. D. Mitchell

Summary: The development of high-throughput sequencing of environmental DNA has facilitated the study of soil microbial diversity patterns. This study compared two sampling approaches for soil protists along an elevation gradient in Japan and found that sampling a single plot per elevation band was sufficient to estimate soil micro-eukaryotic diversity patterns along elevation gradients.

MICROBIAL ECOLOGY (2023)

Meeting Abstract Medicine, General & Internal

Multiple neonicotinoids in children's cerebro-spinal fluid, plasma, and urine

B. Laubscher, M. Diezi, R. Renella, E. A. D. Mitchell, A. Aebi, M. Mulot, G. Glauser

SWISS MEDICAL WEEKLY (2022)

暂无数据