Ecology Drives the Distribution of Specialized Tyrosine Metabolism Modules in Fungi

The salicylate 1,2-dioxygenase as a model for a conventional gentisate 1,2-dioxygenase: crystal structures of the G106A mutant and its adducts with gentisate and salicylate

(2013) Marta Ferraroni et al.   FEBS Journal

Secreted Pyomelanin of Legionella pneumophila Promotes Bacterial Iron Uptake and Growth under Iron-Limiting Conditions

(2013) Huaixin Zheng et al.   INFECTION AND IMMUNITY

Production of Phytoalexins in Peanut (Arachis hypogaea) Seed Elicited by Selected Microorganisms

(2013) Victor S. Sobolev   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions

(2013) Ai Muto et al.   Journal of Chemical Information and Modeling

Physical linkage of metabolic genes in fungi is an adaptation against the accumulation of toxic intermediate compounds

(2013) K. L. McGary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ring-Cleaving Dioxygenases with a Cupin Fold

(2012) Susanne Fetzner   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae

(2012) John G. Gibbons et al.   CURRENT BIOLOGY

Effect of salicylic acid on Fusarium graminearum, the major causal agent of fusarium head blight in wheat

(2012) Peng-Fei Qi et al.   Fungal Biology

Horizontal Transfer and Death of a Fungal Secondary Metabolic Gene Cluster

(2012) Matthew A. Campbell et al.   Genome Biology and Evolution

Two Different Secondary Metabolism Gene Clusters Occupied the Same Ancestral Locus in Fungal Dermatophytes of the Arthrodermataceae

(2012) Han Zhang et al.   PLoS One

SOLiD-SAGE of Endophyte-Infected Red Fescue Reveals Numerous Effects on Host Transcriptome and an Abundance of Highly Expressed Fungal Secreted Proteins

(2012) Karen V. Ambrose et al.   PLoS One

Why biosynthetic genes for chemical defense compounds cluster

(2012) Adam M. Takos et al.   TRENDS IN PLANT SCIENCE

Crystal structures of salicylate 1,2-dioxygenase-substrates adducts: A step towards the comprehension of the structural basis for substrate selection in class III ring cleaving dioxygenases

(2011) Marta Ferraroni et al.   JOURNAL OF STRUCTURAL BIOLOGY

Gentisate and 3-oxoadipate pathways in the yeast Candida parapsilosis: identification and functional analysis of the genes coding for 3-hydroxybenzoate 6-hydroxylase and 4-hydroxybenzoate 1-hydroxylase

(2011) Z. Holesova et al.   MICROBIOLOGY-SGM

Melanogenesis in dermatophyte species in vitro and during infection

(2011) S. Youngchim et al.   MICROBIOLOGY-SGM

Pyomelanin Formation in Aspergillus fumigatus Requires HmgX and the Transcriptional Activator HmgR but Is Dispensable for Virulence

(2011) Sophia Keller et al.   PLoS One

A Method for Inferring the Rate of Evolution of Homologous Characters that Can Potentially Improve Phylogenetic Inference, Resolve Deep Divergence and Correct Systematic Biases

(2011) Carla A. Cummins et al.   SYSTEMATIC BIOLOGY

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

(2011) Christian P Kubicek et al.   GENOME BIOLOGY

Diversity of fungi in creosote-treated crosstie wastes and their resistance to polycyclic aromatic hydrocarbons

(2010) Min-Ji Kim et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Horizontal Transfer of a Large and Highly Toxic Secondary Metabolic Gene Cluster between Fungi

(2010) Jason C. Slot et al.   CURRENT BIOLOGY

Complete Genome Sequence of the Diesel-Degrading Acinetobacter sp. Strain DR1

(2010) J. Jung et al.   JOURNAL OF BACTERIOLOGY

A Putative ABC Transporter, HatABCDE, Is among Molecular Determinants of Pyomelanin Production in Pseudomonas aeruginosa

(2010) R. C. Hunter et al.   JOURNAL OF BACTERIOLOGY

The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrader

(2010) Athanasios Lykidis et al.   PLoS One

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi

(2010) J. C. Slot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The neurotropic black yeast Exophiala dermatitidis has a possible origin in the tropical rain forest

(2010) M. Sudhadham et al.   STUDIES IN MYCOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The genome ofPolaromonas naphthalenivoransstrain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer

(2009) Jane M. Yagi et al.   ENVIRONMENTAL MICROBIOLOGY

Major roles of isocitrate lyase and malate synthase in bacterial and fungal pathogenesis

(2009) M. F. Dunn et al.   MICROBIOLOGY-SGM

Inactivation of the hmgA gene of Pseudomonas aeruginosa leads to pyomelanin hyperproduction, stress resistance and increased persistence in chronic lung infection

(2009) A. Rodriguez-Rojas et al.   MICROBIOLOGY-SGM

Production of Pyomelanin, a Second Type of Melanin, via the Tyrosine Degradation Pathway in Aspergillus fumigatus

(2008) J. Schmaler-Ripcke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Identification of Bacterial Carotenoid Cleavage Dioxygenase Homologues That Cleave the Interphenyl α,β Double Bond of Stilbene Derivatives via a Monooxygenase Reaction

(2008) Erinn K. Marasco et al.   CHEMBIOCHEM

Salicylate 1,2-Dioxygenase from Pseudaminobacter salicylatoxidans: Crystal Structure of a Peculiar Ring-cleaving Dioxygenase

(2008) Irene Matera et al.   JOURNAL OF MOLECULAR BIOLOGY

Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi

(2008) Nora Khaldi et al.   GENOME BIOLOGY

Accumulation of trans-piceid in sorghum seedlings infected with Colletotrichum sublineolum

(2007) Christine K.Y. Yu et al.   PHYTOCHEMISTRY