What does the 5S rRNA multigene family tell us about the origin of the annual Triticeae (Poaceae)?

An Ultrafast Tool for Minimum Reticulate Networks

(2013) Zhi-Zhong Chen et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Are the Great Plains wildrye (Elymus canadensis) and the Siberian wildrye (Elymus sibiricus) conspecific? A study based on the nuclear 5S rDNA sequences

(2012) Bernard R. Baum et al.   Botany

Phylogenetic relationships among the polyploid and diploid Aegilops species inferred from the nuclear 5S rDNA sequences (Poaceae: Triticeae)

(2012) B.R. Baum et al.   GENOME

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Polymorphic nuclear gene sequences indicate a novel genome donor in the polyploid genus Thinopyrum

(2011) Matt Arterburn et al.   HEREDITAS

raxmlGUI: a graphical front-end for RAxML

(2011) Daniele Silvestro et al.   ORGANISMS DIVERSITY & EVOLUTION

Close lower and upper bounds for the minimum reticulate network of multiple phylogenetic trees

(2010) Yufeng Wu   BIOINFORMATICS

Codependence of repetitive sequence classes in genomes: phylogenetic analysis of 5S rDNA families in Hordeum (Triticeae: Poaceae)

(2010) Bernard R. Baum et al.   GENOME

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic relationships among diploid Aegilops species inferred from 5S rDNA units

(2009) B.R. Baum et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

LineageSpecificSeqgen: generating sequence data with lineage-specific variation in the proportion of variable sites

(2008) Liat Shavit Grievink et al.   BMC EVOLUTIONARY BIOLOGY

Loss of 5S rDNA units in the evolution of Agropyron, Pseudoroegneria, and Douglasdeweya

(2008) B. R. Baum et al.   GENOME

A Mixed Branch Length Model of Heterotachy Improves Phylogenetic Accuracy

(2008) Bryan Kolaczkowski et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Molecular confirmation of the genomic constitution of Douglasdeweya (Triticeae: Poaceae): demonstration of the utility of the 5S rDNA sequence as a tool for haplome identification

(2008) Bernard R. Baum et al.   MOLECULAR GENETICS AND GENOMICS

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE