Identification of novel and conserved microRNAs in Coffea canephora and Coffea arabica

In silicomining of novel microRNAs from coffee (Coffea arabica) using expressed sequence tags

(2016) K. B. Rebijith et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Description of plant tRNA-derived RNA fragments (tRFs) associated with argonaute and identification of their putative targets

(2013) Guilherme Loss-Morais et al.   Biology Direct

Arabidopsis Di19 Functions as a Transcription Factor and Modulates PR1, PR2, and PR5 Expression in Response to Drought Stress

(2013) Wen-Xin Liu et al.   Molecular Plant

Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploidCoffea arabicagrown at contrasted temperatures

(2013) Marie-Christine Combes et al.   NEW PHYTOLOGIST

Computational identification of miRNA and targets from expressed sequence tags of coffee (Coffea arabica)

(2013) Arzuba Akter et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Autophagy: Pathways for Self-Eating in Plant Cells

(2012) Yimo Liu et al.   Annual Review of Plant Biology

An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora

(2012) Jorge MC Mondego et al.   BMC PLANT BIOLOGY

Small RNAs in development – insights from plants

(2012) Xuemei Chen   CURRENT OPINION IN GENETICS & DEVELOPMENT

MicroRNAs play critical roles during plant development and in response to abiotic stresses

(2012) Júlio César de Lima et al.   GENETICS AND MOLECULAR BIOLOGY

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

Global alteration of microRNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during Cotton leafroll dwarf polerovirus (CLRDV) infection

(2012) Elisson Romanel et al.   PLANT MOLECULAR BIOLOGY

Identification of MicroRNAs from Eugenia uniflora by High-Throughput Sequencing and Bioinformatics Analysis

(2012) Frank Guzman et al.   PLoS One

Plant secondary siRNA production determined by microRNA-duplex structure

(2012) P. A. Manavella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants

(2011) Xiaozeng Yang et al.   BIOINFORMATICS

Identification of novel soybean microRNAs involved in abiotic and biotic stresses

(2011) Franceli R Kulcheski et al.   BMC GENOMICS

Profile of small interfering RNAs from cotton plants infected with the polerovirus Cotton leafroll dwarf virus

(2011) Tatiane F Silva et al.   BMC MOLECULAR BIOLOGY

Gene silencing by microRNAs: contributions of translational repression and mRNA decay

(2011) Eric Huntzinger et al.   NATURE REVIEWS GENETICS

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions

(2011) Huan Wang et al.   PLANT JOURNAL

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Arabidopsis lyrataSmall RNAs: TransientMIRNAand Small Interfering RNA Loci within theArabidopsisGenus

(2010) Zhaorong Ma et al.   PLANT CELL

Dynamic isomiR regulation in Drosophila development

(2010) S. L. Fernandez-Valverde et al.   RNA

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Genome-wide profiling of Populus small RNAs

(2009) Daniel Klevebring et al.   BMC GENOMICS

Control of cell proliferation in Arabidopsis thaliana by microRNA miR396

(2009) R. E. Rodriguez et al.   DEVELOPMENT

Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv

(2009) Bo Wei et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and Nodules

(2009) C. Lelandais-Briere et al.   PLANT CELL

A toolkit for analysing large-scale plant small RNA datasets

(2008) S. Moxon et al.   BIOINFORMATICS

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

(2008) R. D. Morin et al.   GENOME RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

(2008) K. Nobuta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA