Review
Microbiology
Rokas Juodeikis, Simon R. Carding
Summary: This review focuses on nonlytic outer membrane vesicles (OMVs), a subtype of bacterial extracellular vesicles (BEVs) produced by Gram-negative organisms, emphasizing on the mechanisms of their biogenesis, cargo, and function. Throughout, the issues concerning the characterization of OMVs and distinguishing them from other types of BEVs are highlighted. The review also addresses the shortcomings of commonly used methodologies for BEVs study and proposes solutions to standardize protocols for OMV studies.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
(2022)
Article
Biotechnology & Applied Microbiology
S. Mitsunobu, Y. Ohashi, H. Makita, Y. Suzuki, T. Nozaki, T. Ohigashi, T. Ina, Y. Takaki
Summary: Through a year-long in situ incubation experiment on pyrite at a deep-sea hydrothermal vent field, this study revealed the formation of an acidic microenvironment at the pyrite surface, leading to distinct microbial communities and limited abiotic Fe(II) oxidation rate.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2021)
Article
Engineering, Biomedical
Kanika Suri, Anisha D'Souza, Di Huang, Aashray Bhavsar, Mansoor Amiji
Summary: Cancer therapy is shifting towards immunotherapy that activates the host immune system. Bacterial extracellular vesicles (BEVs) are being studied as a potential tool for controlling immune responses and for drug delivery. However, there are still unanswered questions regarding the use of BEVs, especially for long-term immunotherapies.
BIOACTIVE MATERIALS
(2023)
Review
Biotechnology & Applied Microbiology
Yi Li, Zhicheng Guo, Tian Xu, Yejia Zhang, Lingbing Zeng, Xiaotian Huang, Qiong Liu
Summary: This review summarizes the role of ferroptosis in bacterial infection and its regulatory mechanism, and innovatively speculates on the function and potential mechanism of extracellular vesicles (EVs) in bacterial-induced ferroptosis, aiming to provide possible novel directions and ideas for future anti-infection research.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2022)
Review
Microbiology
Jianwei Chen, Hongfang Zhang, Siqi Wang, Yujie Du, Bin Wei, Qiang Wu, Hong Wang
Summary: Bacterial extracellular vesicles (EVs) play a significant role in bacterial infections by influencing the infection process through various mechanisms. With the increasing problem of antibiotic resistance, researching and developing novel therapeutic approaches is of high importance.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Yadira Pastor, Alba Calvo, Josune Salvador-Erro, Carlos Gamazo
Summary: Shigellosis is a global health concern, particularly in low- and middle-income countries. This study demonstrates that outer membrane vesicles (OMVs) could be a promising vaccine platform for shigellosis, as intradermal immunization with OMVs induces a robust cellular response, generates functional antibodies, and shows cross-protective capacity.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Review
Biochemistry & Molecular Biology
Felix Behrens, Teresa C. Funk-Hilsdorf, Wolfgang M. Kuebler, Szandor Simmons
Summary: Respiratory infection-induced pneumonia is the leading cause of death in global infectious diseases, with antibiotics and vaccines helping to reduce the burden. However, lack or refusal of vaccines and antibiotics in some regions, the rise of multidrug-resistant pathogens, and high fatality rates even in patients treated appropriately pose a global threat. Bacteria's secretome contains extracellular vesicles that can trigger inflammatory responses and serve as promising vaccine candidates.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Review
Biochemistry & Molecular Biology
Muhammad Qasim, Marius Wrage, Bjorn Nuse, Jochen Mattner
Summary: Shigellosis is a gastrointestinal infection caused by Shigella spp. The currently available vaccines have been ineffective in preventing this infection. Outer membrane vesicles (OMVs) are promising novel targets for vaccination due to their immunomodulatory, antigenic and adjuvant properties.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Review
Immunology
Dharmendra Kashyap, Mrutyunjaya Panda, Budhadev Baral, Nidhi Varshney, R. Sajitha, Vasundhra Bhandari, Hamendra Singh Parmar, Amit Prasad, Hem Chandra Jha
Summary: This article provides a detailed overview of the potential usage of outer membrane vesicles (OMV) as adjuvants in vaccine development. OMV-based vaccines offer numerous advantages and ongoing trials are underway for developing OMV adjuvant-based vaccines for SARS-CoV-2. It emphasizes the importance of engineering OMVs to enhance safety.
Article
Immunology
Elena Palmieri, Vanessa Arato, Davide Oldrini, Beatrice Ricchetti, Maria Grazia Aruta, Werner Pansegrau, Sara Marchi, Fabiola Giusti, Ilaria Ferlenghi, Omar Rossi, Renzo Alfini, Carlo Giannelli, Gianmarco Gasperini, Francesca Necchi, Francesca Micoli
Summary: Research has shown that high temperature conditions do not affect the stability and immunogenicity of GMMA, but longer periods of low temperature conditions may have an impact. Monitoring critical quality attributes during stability assessment is crucial for vaccine efficacy.
Review
Microbiology
Yanzhen Wang, Xinghong Luo, Xiaozhen Xiang, Chunbo Hao, Dandan Ma
Summary: Accumulating evidence suggests that not all bidirectional microbiota-host interactions involve direct cell contact. Bacterial extracellular vesicles (BEVs) mediate microbiota functions by delivering effector molecules that modulate host signaling pathways, potentially driving or inhibiting disease pathogenesis in different systems within the host.
FRONTIERS IN MICROBIOLOGY
(2023)
Review
Pharmacology & Pharmacy
Yu Zhang, Yiming Lu, Yixin Xu, Zunkang Zhou, Yichong Li, Wei Ling, Wenliang Song
Summary: Nanomedicine focuses on developing nanocarriers for targeted drug delivery. Synthetic polypeptides, composed of repeating amino acid units, can form polypeptide vesicles under suitable conditions. Outer membrane vesicles (OMVs), originating from Gram-negative bacteria, are spherical buds filled with periplasmic content. PVs and OMVs, due to their biodegradability and biocompatibility, have been utilized as drug carriers. In this review, we discuss recent drug delivery research based on PVs and OMVs, including production methods, vesicle design, and biological assessment, as well as future challenges.
Review
Pharmacology & Pharmacy
Jin Gao, Yujie Su, Zhenjia Wang
Summary: This review provides an overview of the current research on bacterial membrane vesicles (BMVs), including their production, types, and therapeutic applications. The authors discuss various platforms of BMVs and how they can be engineered using chemical, physical, and genetic methods. The review also examines the methods of drug loading in BMVs and their limitations. Several therapeutic platforms of BMVs for improving the treatment of infectious diseases and cancers are reviewed. The authors emphasize the need for rigorous approaches and methods to develop reproducible and scalable drug delivery systems for translation.
ADVANCED DRUG DELIVERY REVIEWS
(2022)
Review
Microbiology
Zhuang Zhu, Fabio Antenucci, Kasper Romer Villumsen, Anders Miki Bojesen
Summary: Gram-negative bacterial vaccines are important tools for preventing bacterial infections and reducing the need for antibiotics. Outer membrane vesicles have great potential as adjuvants, antigens, and delivery platforms in vaccine development. There is a need for the development of novel bacterial vaccines to prevent the advent of a postantibiotic era.
Review
Biotechnology & Applied Microbiology
Yinan Ding, Luhong Wang, Han Li, Fengqin Miao, Zhiyuan Zhang, Chunmei Hu, Weiping Yu, Qiusha Tang, Guoliang Shao
Summary: Immunotherapy has emerged as a promising anticancer therapy, with the ability to activate immune cells, regulate the tumor immune microenvironment, and deliver drugs. Lipid nanovesicles as a drug delivery system have important applications in cancer immunotherapy.
JOURNAL OF NANOBIOTECHNOLOGY
(2022)
Article
Geosciences, Multidisciplinary
Adrian Jarzyna, Maciej Babel, Damian Lugowski, Firouz Vladi, Andriy Yatsyshyn, Danuta Olszewska-Nejbert, Krzysztof Nejbert, Andriy Bogucki
Article
Geosciences, Multidisciplinary
Ashley Gumsley, Geoffrey Manby, Justyna Domanska-Siuda, Krzysztof Nejbert, Krzysztof Michalski
PRECAMBRIAN RESEARCH
(2020)
Article
Geochemistry & Geophysics
Jakub Kotowski, Krzysztof Nejbert, Danuta Olszewska-Nejbert
Article
Microbiology
Paula Roszczenko-Jasinska, Tomasz Krucon, Robert Stasiuk, Renata Matlakowska
Summary: This study identified the presence of XoxF methanol dehydrogenases in a bacterial community dominated by Proteobacteria inhabiting shale rock, with the enzyme being produced by bacterial orders such as Rhizobiales, Rhodobacterales, Rhodospiralles, Burkholderiales, and Nitrosomonadales. The discovery of XoxF proteins in the metaproteome of lithobiontic bacterial communities colonizing underground rocks rich in light lanthanides expands our understanding of the ecology and diversity of these enzymes in natural environments.
FEMS MICROBIOLOGY ECOLOGY
(2021)
Article
Chemistry, Multidisciplinary
Magdalena Dyda, Agnieszka Laudy, Przemyslaw Decewicz, Krzysztof Romaniuk, Martyna Ciezkowska, Anna Szajewska, Danuta Solecka, Lukasz Dziewit, Lukasz Drewniak, Aleksandra Sklodowska
Summary: The study investigates the seasonal changes of microbial community composition on historical sandstone in different biocenoses, revealing increased fungal richness in lichen-dominated environments during winter. Sphingomonas spp. dominated the bacterial genera, with summer strains showing acidification ability and winter strains showing alkalizing activity. Additionally, bacteria capable of nitrogen fixation, hydrocarbon utilization, and halophiles were identified, ensuring stability of the biofilm throughout the year.
APPLIED SCIENCES-BASEL
(2021)
Article
Microbiology
Zhendong Yang, Zhenghua Liu, Aleksandra Sklodowska, Marcin Musialowski, Tomasz Bajda, Huaqun Yin, Lukasz Drewniak
Summary: This study investigated the effectiveness of a sulfide-oxidizing bacterial consortium isolated from post-mining wastes in removing sulfide from industrial leachate, with promising results in reducing sulfide concentration but requiring bioaugmentation with other bacteria for complete leachate treatment to meet discharged limits.
Article
Geochemistry & Geophysics
Jakub Kotowski, Krzysztof Nejbert, Danuta Olszewska-Nejbert
Summary: This study used the geochemistry of detrital rutile grains to analyze the provenance and crystallization temperatures of transgressive Albian quartz sands in southern Poland. The study area was divided into western, central, and eastern parts based on the crystallization temperatures and source areas of rutile grains. Different characteristics and origins of rutile grains were observed in each part of the study area.
Article
Biochemistry & Molecular Biology
Robert Stasiuk, Tomasz Krucon, Renata Matlakowska
Summary: This study provides a comprehensive characterization of tetrapyrrole cofactor biosynthetic pathways in bacterial communities inhabiting shale rock, revealing incomplete heme and cobalamin biosynthesis pathways and the presence of related proteins. The findings are crucial for understanding the ecology, metabolism, and potential impact of bacteria in shale rock biogeochemistry. The hypothesis of using sedimentary porphyrins as precursors for synthesizing tetrapyrrole cofactors points to a unique phenomenon that involves bacteria in the tetrapyrrole ring cycle on Earth.
Article
Geochemistry & Geophysics
Ewa Krzeminska, Leszek Krzeminski, Pawel Poprawa, Jolanta Paczesna, Krzysztof Nejbert
Summary: The U-Pb measurements of youngest zircons from the Mielnik IG1 dolerite in Poland yielded an age of 300 +/- 4 Ma, indicating they were coeval with regional dykes from Sweden, Norway, and England, formed during the same tectonic event. The dolerite's composition, enriched in trace elements, and presence of xenocrysts suggest it was affected by magmatic pulses during Permo-Carboniferous extension across Europe.
Article
Biochemistry & Molecular Biology
Robert Stasiuk, Renata Matlakowska
Summary: The study found that bacteria inhabiting shale rock can affect the heme content and lead to a higher heme concentration in the rock; protoporphyrin accumulation was observed in bacterial cells.
Article
Microbiology
Tomasz Grzyb, Aleksandra Sklodowska
Summary: Anhydrobiosis is the study of organisms' ability to enter a reversible ametabolic state by losing almost all water. This research focuses on the damage caused by desiccation to proteins, nucleic acids, and membrane lipids. Understanding the changes and nature of this damage is essential for studying desiccation-tolerance mechanisms and applications.
Article
Biochemistry & Molecular Biology
Agnieszka Daszczynska, Tomasz Krucon, Robert Stasiuk, Marta Koblowska, Renata Matlakowska
Summary: This study investigated the occurrence and diversity of proteobacterial XoxF-type methanol dehydrogenases (MDHs) in a microbial community inhabiting a fossil organic matter- and sedimentary lanthanide-rich underground mine environment. The results showed that XoxF-type MDHs were produced by different bacteria from Alpha-, Beta-, and Gammaproteobacteria, with Nitrosomonadales and Rhizobiales having the highest presence of XoxF-encoding genes and matching protein sequences. The study also confirmed the accumulation of light lanthanides and the presence of methanol in the microbial mat. This research expands our understanding of XoxF-producing bacteria and the distribution and diversity of these enzymes in natural environments.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Biochemistry & Molecular Biology
Agnieszka Wilamowska, Marta Koblowska, Renata Matlakowska
Summary: This study analyzed the impact of bacterial communities inhabiting shale rocks on the properties and type of kerogen. The presence of bacterial communities led to the oxidation and dehydration of kerogen, affecting the characteristics and composition of the rocks.
Article
Geochemistry & Geophysics
Adam Pieczka, Andreas Ertl, Bozena Golebiowska, Piotr Jelen, Jakub Kotowski, Krzysztof Nejbert, Marcin Stachowicz, Gerald Giester
AMERICAN MINERALOGIST
(2020)
Review
Geology
Krzysztof Nejbert, Boguslaw Baginski, Jakub Kotowski, Petras Jokubauskas, Edyta Jurewicz, Ray Macdonald
ACTA GEOLOGICA POLONICA
(2020)