Conformation-dependent backbone geometry restraints set a new standard for protein crystallographic refinement

Relaxation of backbone bond geometry improves protein energy landscape modeling

(2013) Patrick Conway et al.   PROTEIN SCIENCE

Interplay between Peptide Bond Geometrical Parameters in Nonglobular Structural Contexts

(2013) Luciana Esposito et al.   Biomed Research International

Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase fromCorynebacterium glutamicum

(2012) Axel T. Brunger et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Use of knowledge-based restraints inphenix.refineto improve macromolecular refinement at low resolution

(2012) Jeffrey J. Headd et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Graphical tools for macromolecular crystallography inPHENIX

(2012) Nathaniel Echols et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

A conformation-dependent stereochemical library improves crystallographic refinement even at atomic resolution

(2011) Dale E. Tronrud et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The Phenix software for automated determination of macromolecular structures

(2011) Paul D. Adams et al.   METHODS

Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites

(2011) D. S. Berkholz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A New Generation of Crystallographic Validation Tools for the Protein Data Bank

(2011) Randy J. Read et al.   STRUCTURE

Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins

(2010) Dale E. Tronrud et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

On the complexity of Engh and Huber refinement restraints: the angle τ as example

(2010) Wouter G. Touw et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Model-building strategies for low-resolution X-ray crystallographic data

(2009) Anjum M. Karmali et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

electronic Ligand Builder and Optimization Workbench(eLBOW): a tool for ligand coordinate and restraint generation

(2009) Nigel W. Moriarty et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Protein Geometry Database: a flexible engine to explore backbone conformations and their relationships to covalent geometry

(2009) Donald S. Berkholz et al.   NUCLEIC ACIDS RESEARCH

Proteins Do Not Have Strong Spines After All

(2009) Zbigniew Dauter et al.   STRUCTURE

Conformation Dependence of Backbone Geometry in Proteins

(2009) Donald S. Berkholz et al.   STRUCTURE

A forward-looking suggestion for resolving the stereochemical restraints debate: ideal geometry functions

(2008) P. Andrew Karplus et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY