Article
Mathematical & Computational Biology
Melanie A. Jensen, Qingzhou Feng, William O. Hancock, Scott A. McKinley
Summary: The study introduces a protocol for analyzing cargo trajectory change points with favorable results compared to existing methods. It identifies that the simultaneous presence of antagonistic motors can lead to longer processive runs.
MATHEMATICAL BIOSCIENCES AND ENGINEERING
(2021)
Article
Physics, Multidisciplinary
Xin Shi, Anna-Katharina Pumm, Jonas Isensee, Wenxuan Zhao, Daniel Verschueren, Alejandro Martin-Gonzalez, Ramin Golestanian, Hendrik Dietz, Cees Dekker
Summary: Researchers have demonstrated a self-assembled DNA nanostructure that exhibits flow-driven rotary motion when docked onto a nanopore. These artificial nanoengines operate autonomously under physiological conditions, providing a new approach to constructing energy-transducing motors at nanoscale interfaces.
Article
Biochemistry & Molecular Biology
Stefano Morotti, Haibo Ni, Colin H. Peters, Christian Rickert, Ameneh Asgari-Targhi, Daisuke Sato, Alexey V. Glukhov, Catherine Proenza, Eleonora Grandi
Summary: The study shows that changes in Na+ homeostatic processes dynamically regulate SAN myocyte electrophysiology, with reductions in NKA and NCX function potentially leading to SAN dysfunction.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Editorial Material
Biochemistry & Molecular Biology
William O. Hancock
Summary: A new study explores the transport and force-generating characteristics of KIF1C, a member of the kinesin-3 motor family. It reveals that KIF1C is more capable of sustaining loads compared to its sibling KIF1A, and that patient-derived mutants display significant defects in force generation.
Article
Nanoscience & Nanotechnology
Stefano Corra, Marina Tranfic Bakic, Jessica Groppi, Massimo Baroncini, Serena Silvi, Emanuele Penocchio, Massimiliano Esposito, Alberto Credi
Summary: This study presents a theoretical model and experimental evidence for the operation of an out-of-equilibrium photoactivated artificial molecular pump. The relationship between light energy input and the deviation of the dissipative state from thermodynamic equilibrium in this artificial system is quantitatively analyzed.
NATURE NANOTECHNOLOGY
(2022)
Article
Physics, Fluids & Plasmas
Thomas Speck
Summary: This study investigates microscopic engines that utilize a single active particle as the working medium, demonstrating the recovery of energy for work during the directed motion of the particle at constant temperature. By considering the chemical degrees of freedom, a wide range of synthetic active particles can be studied without the need to determine the exact microscopic mechanism. Analytical results reveal that the quasistatic thermodynamic efficiency increases beyond the linear-response regime and reaches a maximum at high propulsion speeds, indicating the nontrivial consequences of driving in the active engine's efficiency.
Article
Nanoscience & Nanotechnology
Michael Kathan, Stefano Crespi, Niklas O. Thiel, Daniel L. Stares, Denis Morsa, John de Boer, Gianni Pacella, Tobias van den Enk, Piermichele Kobauri, Giuseppe Portale, Christoph A. Schalley, Ben L. Feringa
Summary: In this study, researchers reported a light-fuelled small-molecule ratchet capable of driving a coupled chemical equilibrium energetically uphill. By bridging imine macrocycles with a molecular motor, the machine can adopt different topologies, allowing for the coupling of continuous mechanical motion with a chemical transformation.
NATURE NANOTECHNOLOGY
(2022)
Article
Chemistry, Physical
Mykola Tasinkevych, Artem Ryabov
Summary: We studied the dynamics of a chemical nanoswimmer in a periodically rocked ratchet potential, and found that mechanochemical coupling can be utilized to control the motion of chemically active particles at the nanoscale.
JOURNAL OF MOLECULAR LIQUIDS
(2024)
Article
Chemistry, Multidisciplinary
Nicolai N. Bach, Verena Josef, Harald Maid, Henry Dube
Summary: Researchers have developed a macrocyclic molecular motor structure that can convert a flexible chain into unidirectional linear motion through active mechanical threading. This offers a new approach for molecular knitting technology.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2022)
Article
Mathematics, Applied
N. J. Lopez-Alamilla, R. U. L. Cachi
Summary: We present a methodology to approximate the entropy production for Brownian motion in a tilted periodic potential. The approximation is based on the well-known thermodynamic uncertainty relation and provides a tighter lower limit solely based on drift velocity and diffusion. The approach is systematically analyzed in the tight-binding regime, and a relatively simple rule is provided to validate using the tight-binding approach. The implications of the results outside the tight-binding regime are also discussed.
Article
Chemistry, Multidisciplinary
Sofie K. Jensen, Mathias S. Neumann, Rikke Frederiksen, Mathias L. Skavenborg, Mads C. Larsen, Stinne E. Wessel, Jan O. Jeppesen
Summary: Controlling the movement of CBPQT(4+) ring is essential for the full potential utilization of artificial molecular machines. In this study, two isomeric tri-stable [2]rotaxanes incorporating TTF and MPTTF units were synthesized to measure the energy barriers during the movement of CBPQT(4+) ring. By strategically exchanging thiomethyl barriers with thioethyl groups, the movement of CBPQT(4+) ring in the synthesized compounds can be controlled to occur in only one direction. Cyclic voltammetry and H-1 NMR spectroscopy were used to investigate the switching mechanism. The results demonstrate the first successful induction of directional movement of CBPQT(4+) ring in molecular machines using a combination of TTF and MPTTF units with 90% efficiency.
Article
Chemistry, Multidisciplinary
Anastasia Yu Gitlina, Farzaneh Fadaei-Tirani, Albert Ruggi, Carolina Plaice, Kay Severin
Summary: This study demonstrates that fac-Ir(C^N)(3) can be converted into the thermodynamically less stable mer form through a consecutive reaction with acid and base, which is fast, quantitative, and stereoselective and can be reversed by light. This new isomerization process opens up the possibility of using highly luminescent Ir(C^N)(3) complexes as molecular switches.
Review
Chemistry, Multidisciplinary
Anirban Mondal, Ryojun Toyoda, Romain Costil, Ben L. Feringa
Summary: This article summarizes the design, synthesis, and dynamic properties of molecular machines, and presents methods for controlled switching or rotation of different classes of atropisomers under chemical stimulus, categorizing them as molecular switches, rotors, motors, and autonomous motors. Future perspectives and challenges for building sophisticated molecular machines are also provided.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2022)
Article
Chemistry, Multidisciplinary
Marta Urbanska, Annemarie Ludecke, Wilhelm J. Walter, Antoine M. van Oijen, Karl E. Duderstadt, Stefan Diez
Summary: This study introduces a highly-parallel, microfluidics-based method for rapid collection of force-dependent motility parameters of cytoskeletal motors, significantly improving throughput. DNA-tethered beads are used to apply tunable hydrodynamic forces to stepping kinesin-1 motors, allowing for simultaneous tracking of various motility parameters of hundreds of individual molecules. The approach, applicable to other molecular systems, represents a new methodology for parallelized single-molecule force studies on cytoskeletal motors.
Article
Multidisciplinary Sciences
Alex Albaugh, Geyao Gu, Todd R. Gingrich
Summary: Simulations can unravel the complex relationship between molecular structure and function. In this study, we demonstrate how slight changes in a molecular motor's structure can reverse its typical dynamic behavior using molecular simulations. These findings highlight the potential of molecular simulation in guiding the development of artificial molecular motors.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2023)
Article
Biochemistry & Molecular Biology
Amelie Robert, Peirun Tian, Stephen A. Adam, Mark Kittisopikul, Khuloud Jaqaman, Robert D. Goldman, Vladimir I. Gelfand
Review
Clinical Neurology
Alexander S. Fein, Humberto E. Trejo Bittar, Manisha R. Shende, Ernest M. Scalzetti, Melissa W. Ko
NEURO-OPHTHALMOLOGY
(2019)
Editorial Material
Cell Biology
Rosalind Norkett, Wen Lu, Vladimir I. Gelfand
DEVELOPMENTAL CELL
(2019)
Article
Respiratory System
Christina Morse, Tracy Tabib, John Sembrat, Kristina L. Buschur, Humberto Trejo Bittar, Eleanor Valenzi, Yale Jiang, Daniel J. Kass, Kevin Gibson, Wei Chen, Ana Mora, Panayiotis V. Benos, Mauricio Rojas, Robert Lafyatis
EUROPEAN RESPIRATORY JOURNAL
(2019)
Article
Rheumatology
Eleanor Valenzi, Melissa Bulik, Tracy Tabib, Christina Morse, John Sembrat, Humberto Trejo Bittar, Mauricio Rojas, Robert Lafyatis
ANNALS OF THE RHEUMATIC DISEASES
(2019)
Review
Cell Biology
Urko del Castillo, Rosalind Norkett, Vladimir I. Gelfand
TRENDS IN CELL BIOLOGY
(2019)
Article
Biology
Rosalind Norkett, Urko del Castillo, Wen Lu, Vladimir Gelfand
Article
Biology
Wen Lu, Margot Lakonishok, Rong Liu, Neil Billington, Ashley Rich, Michael Glotzer, James R. Sellers, Vladimir Gelfand
Article
Oncology
Humberto E. Trejo Bittar, Jacob A. Jerome, Douglas Hartman, Liron Pantanowitz, Mitra Mehrad, Sanja Dacic
Article
Biology
Wen Lu, Margot Lakonishok, Anna S. Serpinskaya, Vladimir Gelfand
Summary: Cytoplasmic dynein plays essential roles in Drosophila oocyte growth by actively moving microtubules within nurse cells and from nurse cells to the oocyte via the cytoplasmic bridges, and this movement can transport cytoplasmic particles to the oocyte.
Review
Cell Biology
Wen Lu, Vladimir I. Gelfand
Summary: Cells are the smallest building blocks of living organisms, and often undergo cytoplasmic streaming to compensate for physical constraints in large cells. This phenomenon is driven by molecular motors and plays important roles in various cell types. Additionally, intercellular flow transports cytoplasmic materials for rapid oocyte growth.
JOURNAL OF CELL SCIENCE
(2023)
Article
Biochemistry & Molecular Biology
Bhuvanasundar Renganathan, James P. Zewe, Yuan Cheng, Jean-Michel Paumier, Mark Kittisopikul, Karen M. Ridge, Puneet Opal, Vladimir I. Gelfand
Summary: Gigaxonin acts as an adaptor protein for E3 ubiquitin ligase and is essential for ubiquitination and degradation of intermediate filament (IF) proteins. Mutations in the GAN gene, which encodes gigaxonin, cause giant axonal neuropathy characterized by abnormal accumulation of IFs. This study shows that loss of gigaxonin inhibits IF transport along microtubules by the motor protein kinesin-1, leading to abnormal IF distribution.
Article
Multidisciplinary Sciences
Urko del Castillo, Hans-Arno J. Mueller, Vladimir I. Gelfand
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2020)
Article
Cardiac & Cardiovascular Systems
Didem Saygin, Tracy Tabib, Humberto E. T. Bittar, Eleanor Valenzi, John Sembrat, Stephen Y. Chan, Mauricio Rojas, Robert Lafyatis
PULMONARY CIRCULATION
(2020)
Article
Respiratory System
Joo Heung Yoon, Mehdi Nouraie, Xiaoping Chen, Richard H. Zou, Jacobo Sellares, Kristen L. Veraldi, Jared Chiarchiaro, Kathleen Lindell, David O. Wilson, Naftali Kaminski, Timothy Burns, Humberto Trejo Bittar, Samuel Yousem, Kevin Gibson, Daniel J. Kass
RESPIRATORY RESEARCH
(2018)