标题
Label-free mass spectrometry-based proteomics for biomarker discovery and validation
作者
关键词
-
出版物
EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
Volume 12, Issue 4, Pages 343-359
出版商
Informa UK Limited
发表日期
2012-05-22
DOI
10.1586/erm.12.31
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology
- (2011) Jürgen Cox et al. Annual Review of Biochemistry
- SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists
- (2011) Björn Voss et al. BIOINFORMATICS
- Status and Prospects for Discovery and Verification of New Biomarkers of Cardiovascular Disease by Proteomics
- (2011) Robert E. Gerszten et al. CIRCULATION RESEARCH
- Discovery of the serum biomarker proteins in severe preeclampsia by proteomic analysis
- (2011) Jisook Park et al. EXPERIMENTAL AND MOLECULAR MEDICINE
- Microproteomic analysis of 10,000 laser captured microdissected breast tumor cells using short-range sodium dodecyl sulfate-polyacrylamide gel electrophoresis and porous layer open tubular liquid chromatography tandem mass spectrometry
- (2011) Dipak Thakur et al. JOURNAL OF CHROMATOGRAPHY A
- Identification of Vascular Breast Tumor Markers by Laser Capture Microdissection and Label-Free LC−MS
- (2011) Jennifer J. Hill et al. JOURNAL OF PROTEOME RESEARCH
- Comprehensive Proteome Analysis of Malignant Pleural Effusion for Lung Cancer Biomarker Discovery by Using Multidimensional Protein Identification Technology
- (2011) Chia-Jung Yu et al. JOURNAL OF PROTEOME RESEARCH
- In-Depth Proteomics of Ovarian Cancer Ascites: Combining Shotgun Proteomics and Selected Reaction Monitoring Mass Spectrometry
- (2011) Sarah Elschenbroich et al. JOURNAL OF PROTEOME RESEARCH
- A Xenograft Mouse Model Coupled with In-depth Plasma Proteome Analysis Facilitates Identification of Novel Serum Biomarkers for Human Ovarian Cancer
- (2011) Hsin-Yao Tang et al. JOURNAL OF PROTEOME RESEARCH
- High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers
- (2011) Jacek R. Wiśniewski et al. JOURNAL OF PROTEOME RESEARCH
- Impact of fixation time on GeLC–MS/MS proteomic profiling of formalin-fixed, paraffin-embedded tissues
- (2011) Alessandro Tanca et al. Journal of Proteomics
- Verification of a biomarker discovery approach for detection of Down syndrome in amniotic fluid via multiplex selected reaction monitoring (SRM) assay
- (2011) Chan-Kyung J. Cho et al. Journal of Proteomics
- Proteomic identification of vanin-1 as a marker of kidney damage in a rat model of type 1 diabetic nephropathy
- (2011) Tim Fugmann et al. KIDNEY INTERNATIONAL
- The Path to Clinical Proteomics Research: Integration of Proteomics, Genomics, Clinical Laboratory and Regulatory Science
- (2011) Emily S. Boja et al. Korean Journal of Laboratory Medicine
- A Bayesian Mixture Model for Comparative Spectral Count Data in Shotgun Proteomics
- (2011) James G. Booth et al. MOLECULAR & CELLULAR PROTEOMICS
- Verification of Male Infertility Biomarkers in Seminal Plasma by Multiplex Selected Reaction Monitoring Assay
- (2011) Andrei P. Drabovich et al. MOLECULAR & CELLULAR PROTEOMICS
- An Informatics-assisted Label-free Approach for Personalized Tissue Membrane Proteomics: Case Study on Colorectal Cancer
- (2011) Chia-Li Han et al. MOLECULAR & CELLULAR PROTEOMICS
- A Serum Protein Profile Predictive of the Resistance to Neoadjuvant Chemotherapy in Advanced Breast Cancers
- (2011) Seok-Won Hyung et al. MOLECULAR & CELLULAR PROTEOMICS
- A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease
- (2011) Terri A Addona et al. NATURE BIOTECHNOLOGY
- A targeted proteomics–based pipeline for verification of biomarkers in plasma
- (2011) Jeffrey R Whiteaker et al. NATURE BIOTECHNOLOGY
- Rapid empirical discovery of optimal peptides for targeted proteomics
- (2011) Andrew B Stergachis et al. NATURE METHODS
- Monitoring protein expression in whole-cell extracts by targeted label- and standard-free LC-MS/MS
- (2011) Katharina Bluemlein et al. Nature Protocols
- Urine Proteomics and Biomarkers in Renal Disease
- (2011) Min Jeong Kim et al. NEPHRON EXPERIMENTAL NEPHROLOGY
- Survey of Tyrosine Kinase Signaling Reveals ROS Kinase Fusions in Human Cholangiocarcinoma
- (2011) Ting-Lei Gu et al. PLoS One
- Distinct Cerebrospinal Fluid Proteomes Differentiate Post-Treatment Lyme Disease from Chronic Fatigue Syndrome
- (2011) Steven E. Schutzer et al. PLoS One
- A New Method for Isolation of Interstitial Fluid from Human Solid Tumors Applied to Proteomic Analysis of Ovarian Carcinoma Tissue
- (2011) Hanne Haslene-Hox et al. PLoS One
- A Comprehensive Peptidome Profiling Technology for the Identification of Early Detection Biomarkers for Lung Adenocarcinoma
- (2011) Koji Ueda et al. PLoS One
- Proteomics Portrait of Archival Lesions of Chronic Pancreatitis
- (2011) Sheng Pan et al. PLoS One
- Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer
- (2011) I. Cima et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mining the malignant ascites proteome for pancreatic cancer biomarkers
- (2011) Hari Kosanam et al. PROTEOMICS
- Shotgun proteomics of human bile in hilar cholangiocarcinoma
- (2011) Shahid G. Farid et al. PROTEOMICS
- Less label, more free: Approaches in label-free quantitative mass spectrometry
- (2011) Karlie A. Neilson et al. PROTEOMICS
- Utility of formalin-fixed, paraffin-embedded liver biopsy specimens for global proteomic analysis in nonalcoholic steatohepatitis
- (2011) Lauren N. Bell et al. Proteomics Clinical Applications
- Setting proteins free: Progresses and achievements in proteomics of formalin-fixed, paraffin-embedded tissues
- (2011) Alessandro Tanca et al. Proteomics Clinical Applications
- Selected reaction monitoring (SRM) mass spectrometry without isotope labeling can be used for rapid protein quantification
- (2011) Wenbo Zhi et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Comparison of stable-isotope labeling with amino acids in cell culture and spectral counting for relative quantification of protein expression
- (2011) Timothy S. Collier et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Noninvasive diagnosis of intraamniotic infection: proteomic biomarkers in vaginal fluid
- (2010) Jane Hitti et al. AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY
- Targeted label-free quantitative analysis of secretory proteins from adipocytes in response to oxidative stress
- (2010) Sunkyu Choi et al. ANALYTICAL BIOCHEMISTRY
- Refinements to Label Free Proteome Quantitation: How to Deal with Peptides Shared by Multiple Proteins
- (2010) Ying Zhang et al. ANALYTICAL CHEMISTRY
- Direct Comparison of Stable Isotope Labeling by Amino Acids in Cell Culture and Spectral Counting for Quantitative Proteomics
- (2010) Timothy S. Collier et al. ANALYTICAL CHEMISTRY
- Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
- (2010) Brendan MacLean et al. BIOINFORMATICS
- Advances in Proximal Fluid Proteomics for Disease Biomarker Discovery
- (2010) Pang-ning Teng et al. JOURNAL OF PROTEOME RESEARCH
- Proteome, Phosphoproteome, and N-Glycoproteome Are Quantitatively Preserved in Formalin-Fixed Paraffin-Embedded Tissue and Analyzable by High-Resolution Mass Spectrometry
- (2010) Paweł Ostasiewicz et al. JOURNAL OF PROTEOME RESEARCH
- Galectin-3 Is a Candidate Biomarker for Amyotrophic Lateral Sclerosis: Discovery by a Proteomics Approach
- (2010) Jian-Ying Zhou et al. JOURNAL OF PROTEOME RESEARCH
- Workflow Comparison for Label-Free, Quantitative Secretome Proteomics for Cancer Biomarker Discovery: Method Evaluation, Differential Analysis, and Verification in Serum
- (2010) Sander R. Piersma et al. JOURNAL OF PROTEOME RESEARCH
- In-Depth Proteomic Analyses of Direct Expressed Prostatic Secretions
- (2010) Richard R. Drake et al. JOURNAL OF PROTEOME RESEARCH
- Initial Development and Validation of a Novel Extraction Method for Quantitative Mining of the Formalin-Fixed, Paraffin-Embedded Tissue Proteome for Biomarker Investigations
- (2010) Niroshini J. Nirmalan et al. JOURNAL OF PROTEOME RESEARCH
- Mining the Plasma Proteome for Disease Applications Across Seven Logs of Protein Abundance
- (2010) Q. Zhang et al. JOURNAL OF PROTEOME RESEARCH
- Investigating Neoplastic Progression of Ulcerative Colitis with Label-Free Comparative Proteomics
- (2010) Damon May et al. JOURNAL OF PROTEOME RESEARCH
- On the Development of Plasma Protein Biomarkers
- (2010) Silvia Surinova et al. JOURNAL OF PROTEOME RESEARCH
- Systematic Discovery of Ectopic Pregnancy Serum Biomarkers Using 3-D Protein Profiling Coupled with Label-free Quantitation
- (2010) Lynn A. Beer et al. JOURNAL OF PROTEOME RESEARCH
- Chemical proteomic and bioinformatic strategies for the identification and quantification of vascular antigens in cancer
- (2010) Verena Strassberger et al. Journal of Proteomics
- Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives
- (2010) Alessandro Tanca et al. Journal of Proteomics
- Subnuclear Proteomics in Colorectal Cancer
- (2010) Jakob Albrethsen et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted proteomics by selected reaction monitoring mass spectrometry: applications to systems biology and biomarker discovery
- (2010) Sarah Elschenbroich et al. Molecular BioSystems
- Integrative Proteomic Analysis of Serum and Peritoneal Fluids Helps Identify Proteins that Are Up-Regulated in Serum of Women with Ovarian Cancer
- (2010) Lynn M. Amon et al. PLoS One
- Use of selected reaction monitoring data for label-free quantification of protein modification stoichiometry
- (2010) Deepa Balasubramaniam et al. PROTEOMICS
- Proteomic analysis of human gastric juice: A shotgun approach
- (2010) Cynthia R. M. Y. Liang et al. PROTEOMICS
- Combining laser capture microdissection and proteomics: Methodologies and clinical applications
- (2010) Baogang J. Xu Proteomics Clinical Applications
- Quantitative proteomics for investigating psychiatric disorders
- (2010) Michaela D. Filiou et al. Proteomics Clinical Applications
- Comparison of the performance of two affinity depletion spin filters for quantitative proteomics of CSF: Evaluation of sensitivity and reproducibility of CSF analysis using GeLC-MS/MS and spectral counting
- (2010) Silvina A. Fratantoni et al. Proteomics Clinical Applications
- Spectral counting robust on high mass accuracy mass spectrometers
- (2010) Wolfgang Hoehenwarter et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics
- (2009) Thang V. Pham et al. BIOINFORMATICS
- Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma
- (2009) Ayako Negishi et al. CANCER SCIENCE
- Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics
- (2009) Paola Picotti et al. CELL
- Perspectives of targeted mass spectrometry for protein biomarker verification
- (2009) Ruth Hüttenhain et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Proteomics strategies for target identification and biomarker discovery in cancer
- (2009) Uros Rajcevic Frontiers in Bioscience-Landmark
- Sources of Bias in Specimens for Research About Molecular Markers for Cancer
- (2009) David F. Ransohoff et al. JOURNAL OF CLINICAL ONCOLOGY
- Proteomic Identification of Salivary Biomarkers of Type-2 Diabetes
- (2009) Paturi V. Rao et al. JOURNAL OF PROTEOME RESEARCH
- Statistical Design of Quantitative Mass Spectrometry-Based Proteomic Experiments
- (2009) Ann L. Oberg et al. JOURNAL OF PROTEOME RESEARCH
- IDEAL-Q, an Automated Tool for Label-free Quantitation Analysis Using an Efficient Peptide Alignment Approach and Spectral Data Validation
- (2009) Chih-Chiang Tsou et al. MOLECULAR & CELLULAR PROTEOMICS
- Equivalence of Protein Inventories Obtained from Formalin-fixed Paraffin-embedded and Frozen Tissue in Multidimensional Liquid Chromatography-Tandem Mass Spectrometry Shotgun Proteomic Analysis
- (2009) Robert W. Sprung et al. MOLECULAR & CELLULAR PROTEOMICS
- Up-regulated Proteins in the Fluid Bathing the Tumour Cell Microenvironment as Potential Serological Markers for Early Detection of Cancer of the Breast
- (2009) Pavel Gromov et al. Molecular Oncology
- Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma
- (2009) Terri A Addona et al. NATURE BIOTECHNOLOGY
- Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis
- (2009) Noelle M Griffin et al. NATURE BIOTECHNOLOGY
- Comparative Serum Proteome Analysis of Human Lymph Node Negative/Positive Invasive Ductal Carcinoma of the Breast and Benign Breast Disease Controls via Label-Free Semiquantitative Shotgun Technology
- (2009) Xiaofang Hu et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Protein quantification across hundreds of experimental conditions
- (2009) Z. Khan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Isotope coded protein label quantification of serum proteins—Comparison with the label-free LC–MS and validation using the MRM approach
- (2009) A. Turtoi et al. TALANTA
- N-glycoprotein profiling of lung adenocarcinoma pleural effusions by shotgun proteomics
- (2008) Alex Soltermann et al. CANCER
- Proteomics-driven cancer biomarker discovery: looking to the future
- (2008) Richard J Simpson et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Identification of new accessible tumor antigens in human colon cancer byex vivoprotein biotinylation and comparative mass spectrometry analysis
- (2008) Paolo Conrotto et al. INTERNATIONAL JOURNAL OF CANCER
- Proteome Profiling of Breast Tumors by Gel Electrophoresis and Nanoscale Electrospray Ionization Mass Spectrometry
- (2008) Louise Alldridge et al. JOURNAL OF PROTEOME RESEARCH
- Comparative Proteomic Analysis of Non-small-cell Lung Cancer and Normal Controls Using Serum Label-Free Quantitative Shotgun Technology
- (2008) Jun Pan et al. LUNG
- A Multiplexed Quantitative Strategy for Membrane Proteomics
- (2008) Chia-Li Han et al. MOLECULAR & CELLULAR PROTEOMICS
- Significance Analysis of Spectral Count Data in Label-free Shotgun Proteomics
- (2008) Hyungwon Choi et al. MOLECULAR & CELLULAR PROTEOMICS
- Selected reaction monitoring for quantitative proteomics: a tutorial
- (2008) Vinzenz Lange et al. Molecular Systems Biology
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen
- (2008) John M. Asara et al. PROTEOMICS
- A peptide-centric approach to breast cancer biomarker discovery utilizing label-free multiple reaction monitoring mass spectrometry
- (2008) Gergana Metodieva et al. Proteomics Clinical Applications
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