Limitations to estimating bacterial cross-species transmission using genetic and genomic markers: inferences from simulation modeling

Within-host evolution of Brucella canis during a canine brucellosis outbreak in a kennel

(2013) Miklós Gyuranecz et al.   BMC Veterinary Research

DNA Genotyping Suggests that Recent Brucellosis Outbreaks in the Greater Yellowstone Area Originated from Elk

(2013) Albano Beja-Pereira et al.   JOURNAL OF WILDLIFE DISEASES

Bovine Tuberculosis in Livestock and Wild Boar on the Mediterranean Island, Corsica

(2013) Céline Richomme et al.   JOURNAL OF WILDLIFE DISEASES

Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints

(2013) N. R. Faria et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular Epidemiology of Brucella abortus Isolates from Cattle, Elk, and Bison in the United States, 1998 to 2011

(2012) James Higgins et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transforming clinical microbiology with bacterial genome sequencing

(2012) Xavier Didelot et al.   NATURE REVIEWS GENETICS

Molecular phylogenetics: principles and practice

(2012) Ziheng Yang et al.   NATURE REVIEWS GENETICS

Insights from genomic comparisons of genetically monomorphic bacterial pathogens

(2012) M. Achtman   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Whole Genome Sequencing Reveals Local Transmission Patterns of Mycobacterium bovis in Sympatric Cattle and Badger Populations

(2012) Roman Biek et al.   PLoS Pathogens

Suspicion of Mycobacterium avium subsp. paratuberculosis Transmission between Cattle and Wild-Living Red Deer (Cervus elaphus) by Multitarget Genotyping

(2011) Isabel Fritsch et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Management of Yellowstone bison and brucellosis transmission risk – Implications for conservation and restoration

(2011) P.J. White et al.   BIOLOGICAL CONSERVATION

Population divergence with or without admixture: selecting models using an ABC approach

(2011) V C Sousa et al.   HEREDITY

Impact of homoplasy on variable numbers of tandem repeats and spoligotypes in Mycobacterium tuberculosis

(2011) Josephine F. Reyes et al.   INFECTION GENETICS AND EVOLUTION

Probable Zoonotic Leprosy in the Southern United States

(2011) Richard W. Truman et al.   NEW ENGLAND JOURNAL OF MEDICINE

The population genetics of commensal Escherichia coli

(2010) Olivier Tenaillon et al.   NATURE REVIEWS MICROBIOLOGY

Viral phylodynamics and the search for an 'effective number of infections'

(2010) S. D. W. Frost et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats

(2010) D. G. Streicker et al.   SCIENCE

Occurrence of Mycobacterium avium subspecies paratuberculosis across host species and European countries with evidence for transmission between wildlife and domestic ruminants

(2009) Karen Stevenson et al.   BMC MICROBIOLOGY

Phylodynamics of Infectious Disease Epidemics

(2009) Erik M. Volz et al.   GENETICS

Phylogenetic understanding of clonal populations in an era of whole genome sequencing

(2009) Talima Pearson et al.   INFECTION GENETICS AND EVOLUTION

Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella

(2009) J. T. Foster et al.   JOURNAL OF BACTERIOLOGY

Multilocus Variable-Number Tandem-Repeat Method for Typing Salmonella enterica Serovar Newport

(2009) M. A. Davis et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Comparative genomic and phylogeographic analysis of Mycobacterium leprae

(2009) Marc Monot et al.   NATURE GENETICS

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

Genotyping of Genetically Monomorphic Bacteria: DNA Sequencing in Mycobacterium tuberculosis Highlights the Limitations of Current Methodologies

(2009) Iñaki Comas et al.   PLoS One

Epidemic Dynamics at the Human-Animal Interface

(2009) J. O. Lloyd-Smith et al.   SCIENCE

MIRU-VNTR typing adds discriminatory value to groups of Mycobacterium bovis and Mycobacterium caprae strains defined by spoligotyping

(2009) E.L. Duarte et al.   VETERINARY MICROBIOLOGY

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens

(2008) Mark Achtman   Annual Review of Microbiology

Global trends in emerging infectious diseases

(2008) Kate E. Jones et al.   NATURE

Infecting epidemiology with genetics: a new frontier in disease ecology

(2008) Elizabeth A. Archie et al.   TRENDS IN ECOLOGY & EVOLUTION

Persistence and molecular evolution of Mycobacterium bovis population from cattle and wildlife in Doñana National Park revealed by genotype variation

(2008) Beatriz Romero et al.   VETERINARY MICROBIOLOGY