HOST SWITCHING PROMOTES DIVERSITY IN HOST-SPECIALIZED MYCOPARASITIC FUNGI: UNCOUPLED EVOLUTION IN THEBIATOROPSIS-USNEASYSTEM

A phylogenetic test of the parasite-host associations between Maculinea butterflies (Lepidoptera: Lycaenidae) and Myrmica ants (Hymenoptera: Formicidae)

(2014) Gunther JANSEN et al.   EUROPEAN JOURNAL OF ENTOMOLOGY

Testing the use of ITS rDNA and protein-coding genes in the generic and species delimitation of the lichen genus Usnea (Parmeliaceae, Ascomycota)

(2013) Camille Truong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution

(2013) D. M. de Vienne et al.   NEW PHYTOLOGIST

Phylogenetic Analysis Reveals a Cryptic Species Blastomyces gilchristii, sp. nov. within the Human Pathogenic Fungus Blastomyces dermatitidis

(2013) Elizabeth M. Brown et al.   PLoS One

Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets

(2013) Tomochika Fujisawa et al.   SYSTEMATIC BIOLOGY

Codivergence and multiple host species use by fig wasp populations of the Ficus pollination mutualism

(2012) Michael J McLeish et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

(2012) Noah M Reid et al.   BMC EVOLUTIONARY BIOLOGY

THE ORIGIN OF SPECIFICITY BY MEANS OF NATURAL SELECTION: EVOLVED AND NONHOST RESISTANCE IN HOST-PATHOGEN INTERACTIONS

(2012) Janis Antonovics et al.   EVOLUTION

Lichen myco- and photobiont diversity and their relationships at the edge of life (McMurdo Dry Valleys, Antarctica)

(2012) Sergio Pérez-Ortega et al.   FEMS MICROBIOLOGY ECOLOGY

Lichenicolous fungi show population subdivision by host species but do not share population history with their hosts

(2012) Silke Werth et al.   Fungal Biology

Discovery of Retroviral Homologs in Bats: Implications for the Origin of Mammalian Gammaretroviruses

(2012) Jie Cui et al.   JOURNAL OF VIROLOGY

Complex patterns of host switching in New World arenaviruses

(2012) NANCY R. IRWIN et al.   MOLECULAR ECOLOGY

Phylogenetic species recognition reveals host-specific lineages among poplar rust fungi

(2012) Agathe Vialle et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic Codivergence Supports Coevolution of Mimetic Heliconius Butterflies

(2012) Jennifer Hoyal Cuthill et al.   PLoS One

Integrative Taxonomy and Molecular Phylogeny of Genus Aplysina (Demospongiae: Verongida) from Mexican Pacific

(2012) José Antonio Cruz-Barraza et al.   PLoS One

Using Phylogenetic and Coalescent Methods to Understand the Species Diversity in the Cladia aggregata Complex (Ascomycota, Lecanorales)

(2012) Sittiporn Parnmen et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Host-switching by a vertically transmitted rhabdovirus in Drosophila

(2011) B. Longdon et al.   Biology Letters

The lichen genus Usnea (Parmeliaceae) in the tropical Andes and the Galapagos: species with a red-orange cortical or subcortical pigmentation

(2011) Camille Truong et al.   BRYOLOGIST

The evolution of species concepts and species recognition criteria in plant pathogenic fungi

(2011) Lei Cai et al.   FUNGAL DIVERSITY

Quantifying the Phylodynamic Forces Driving Papillomavirus Evolution

(2011) M. Gottschling et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny and character evolution in the jelly fungi (Tremellomycetes, Basidiomycota, Fungi)

(2011) Ana M. Millanes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

raxmlGUI: a graphical front-end for RAxML

(2011) Daniele Silvestro et al.   ORGANISMS DIVERSITY & EVOLUTION

A case for re-inventory of Australia's plant pathogens

(2011) K.D. Hyde et al.   PERSOONIA

Correlating Early Evolution of Parasitic Platyhelminths to Gondwana Breakup

(2011) Mathieu Badets et al.   SYSTEMATIC BIOLOGY

Gene Gain and Loss during Evolution of Obligate Parasitism in the White Rust Pathogen of Arabidopsis thaliana

(2011) Eric Kemen et al.   PLOS BIOLOGY

Cryptic species in lichen-forming fungi

(2011) Ana Crespo et al.   IMA Fungus

Jane: a new tool for the cophylogeny reconstruction problem

(2010) Chris Conow et al.   Algorithms for Molecular Biology

Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters

(2010) Ana Crespo et al.   ANALES DEL JARDIN BOTANICO DE MADRID

Pleurotus eryngii species complex: Sequence analysis and phylogeny based on partial EF1α and RPB2 genes

(2010) Alma E. Rodriguez Estrada et al.   Fungal Biology

Molecular diversity of fungal communities in agricultural soils from Lower Austria

(2010) Sylvia Klaubauf et al.   FUNGAL DIVERSITY

Phylogeny, morphology and pathogenicity of Diaporthe and Phomopsis species on almond in Portugal

(2010) Eugénio L. F. Diogo et al.   FUNGAL DIVERSITY

Description of Holtermanniella gen. nov., including Holtermanniella takashimae sp. nov. and four new combinations, and proposal of the order Holtermanniales to accommodate tremellomycetous yeasts of the Holtermannia clade

(2010) M. Wuczkowski et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phylogenetic species delimitation in ectomycorrhizal fungi and implications for barcoding: the case of the Tricholoma scalpturatum complex (Basidiomycota)

(2010) PATRICIA JARGEAT et al.   MOLECULAR ECOLOGY

Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories

(2010) JEFF R. POWELL et al.   MOLECULAR ECOLOGY

An integrative approach to species discovery in odonates: from character-based DNA barcoding to ecology

(2010) SANDRA DAMM et al.   MOLECULAR ECOLOGY

Cophylogeny and biogeography of the fungal parasite Cyttaria and its host Nothofagus, southern beech

(2010) Kristin R. Peterson et al.   MYCOLOGIA

A constructive step towards selecting a DNA barcode for fungi

(2010) Ursula Eberhardt   NEW PHYTOLOGIST

DNA barcoding of arbuscular mycorrhizal fungi

(2010) Herbert Stockinger et al.   NEW PHYTOLOGIST

Loss of pathogens in threatened plant species

(2010) Amanda K. Gibson et al.   OIKOS

Host shifts and evolutionary radiations of butterflies

(2010) J. A. Fordyce   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A multilocus approach to assessing co-evolutionary relationships between Steinernema spp. (Nematoda: Steinernematidae) and their bacterial symbionts Xenorhabdus spp. (γ-Proteobacteria: Enterobacteriaceae)

(2010) Ming-Min Lee et al.   SYSTEMATIC PARASITOLOGY

Species delimitation and evolution of metal bioaccumulation in the lichenizedAcarospora smaragdula(Ascomycota, Fungi) complex

(2009) Mats Wedin et al.   CLADISTICS

Integrated taxonomy: traditional approach and DNA barcoding for the identification of filarioid worms and related parasites (Nematoda)

(2009) Emanuele Ferri et al.   Frontiers in Zoology

Undersampling bias: the null hypothesis for singleton species in tropical arthropod surveys

(2009) Jonathan A. Coddington et al.   JOURNAL OF ANIMAL ECOLOGY

Cophylogeny of Nosema (Microsporidia: Nosematidae) and Bees (Hymenoptera: Apidae) Suggests Both Cospeciation and a Host-switch

(2009) Aaron B. A. Shafer et al.   JOURNAL OF PARASITOLOGY

Evolution of Picornaviridae: An examination of phylogenetic relationships and cophylogeny

(2009) Nicole Lewis-Rogers et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Can mtDNA Barcodes Be Used to Delimit Species? A Response to Pons et al. (2006)

(2009) Konrad Lohse   SYSTEMATIC BIOLOGY

Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation

(2009) Michael T. Monaghan et al.   SYSTEMATIC BIOLOGY

Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: Prevalence of host shifts and importance of delimiting parasite species for inferring cospeciation

(2008) Guislaine Refrégier et al.   BMC EVOLUTIONARY BIOLOGY

DISTINGUISHING COEVOLUTION FROM COVICARIANCE IN AN OBLIGATE POLLINATION MUTUALISM: ASYNCHRONOUS DIVERGENCE IN JOSHUA TREE AND ITS POLLINATORS

(2008) Christopher Irwin Smith et al.   EVOLUTION

Speciation in fungi

(2008) Tatiana Giraud et al.   FUNGAL GENETICS AND BIOLOGY

Speciation and DNA barcodes: testing the effects of dispersal on the formation of discrete sequence clusters

(2008) A. Papadopoulou et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Fine-scale cospeciation between Brachycaudus and Buchnera aphidicola: bacterial genome helps define species and evolutionary relationships in aphids

(2008) E. Jousselin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Codivergence in Heteromyid Rodents (Rodentia: Heteromyidae) and Their Sucking Lice of the Genus Fahrenholzia (Phthiraptera: Anoplura)

(2008) Jessica E. Light et al.   SYSTEMATIC BIOLOGY