PERCHED AT THE MITO-NUCLEAR CROSSROADS: DIVERGENT MITOCHONDRIAL LINEAGES CORRELATE WITH ENVIRONMENT IN THE FACE OF ONGOING NUCLEAR GENE FLOW IN AN AUSTRALIAN BIRD

Local Adaptation along Smooth Ecological Gradients Causes Phylogeographic Breaks and Phenotypic Clustering

(2012) Darren E. Irwin   AMERICAN NATURALIST

Fine-scale effects of habitat loss and fragmentation despite large-scale gene flow for some regionally declining woodland bird species

(2012) Katherine A. Harrisson et al.   LANDSCAPE ECOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

W chromosome expression responds to female-specific selection

(2012) H. K. Moghadam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sympatric mitochondrial divergence without reproductive isolation in the common redstartPhoenicurus phoenicurus

(2012) Silje Hogner et al.   Ecology and Evolution

Multilocus Resolution of Phylogeny and Timescale in the Extant Adaptive Radiation of Hawaiian Honeycreepers

(2011) Heather R.L. Lerner et al.   CURRENT BIOLOGY

A TIGHT BALANCE BETWEEN NATURAL SELECTION AND GENE FLOW IN A SOUTHERN AFRICAN ARID-ZONE ENDEMIC BIRD

(2011) Ângela M. Ribeiro et al.   EVOLUTION

Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota

(2011) Margaret Byrne et al.   JOURNAL OF BIOGEOGRAPHY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A framework for comparing processes of speciation in the presence of gene flow

(2011) CAROLE M. SMADJA et al.   MOLECULAR ECOLOGY

Random interbreeding between cryptic lineages of the Common Raven: evidence for speciation in reverse

(2011) WILLIAM C. WEBB et al.   MOLECULAR ECOLOGY

Mitochondrial and nuclear DNA phylogenies reveal a complex evolutionary history in the Australasian robins (Passeriformes: Petroicidae)

(2011) Les Christidis et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow

(2011) S. Via   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ancient host specificity within a single species of brood parasitic bird

(2011) C. N. Spottiswoode et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Divergence with Gene Flow: Models and Data

(2010) Catarina Pinho et al.   Annual Review of Ecology Evolution and Systematics

Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation

(2010) Ryan C Garrick et al.   BMC EVOLUTIONARY BIOLOGY

QUANTIFYING THE PLEISTOCENE HISTORY OF THE OAK GALL PARASITOID CECIDOSTIBA FUNGOSA USING TWENTY INTRON LOCI

(2010) Konrad Lohse et al.   EVOLUTION

A tale of two genomes: contrasting patterns of phylogeographic structure in a widely distributed bat

(2010) AMY S. TURMELLE et al.   MOLECULAR ECOLOGY

Linking the mitochondrial genotype to the organismal phenotype

(2010) J. W. O. BALLARD et al.   MOLECULAR ECOLOGY

Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data

(2010) PIERRE LEGENDRE et al.   Molecular Ecology Resources

Adaptive evolution of energy metabolism genes and the origin of flight in bats

(2010) Y.-Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

MIGRATION-SELECTION BALANCE AND LOCAL ADAPTATION OF MITOCHONDRIAL HAPLOTYPES IN RUFOUS-COLLARED SPARROWS (ZONOTRICHIA CAPENSIS) ALONG AN ELEVATIONAL GRADIENT

(2009) Zachary A. Cheviron et al.   EVOLUTION

Biogeography of the Australian monsoon tropics

(2009) D. M. J. S. Bowman et al.   JOURNAL OF BIOGEOGRAPHY

Countering criticisms of single mitochondrial DNA gene barcoding in birds

(2009) ALLAN J. BAKER et al.   Molecular Ecology Resources

Multi-locus phylogeny clarifies the systematics of the Australo-Papuan robins (Family Petroicidae, Passeriformes)

(2009) Kate Loynes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular systematics and evolutionary origins of the genus Petaurus (Marsupialia: Petauridae) in Australia and New Guinea

(2009) Mansoureh Malekian et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic modulation of energy metabolism in birds through mitochondrial function

(2009) B. I. Tieleman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

HETEROGENEOUS GENOMIC DIFFERENTIATION BETWEEN WALKING-STICK ECOTYPES: "ISOLATION BY ADAPTATION" AND MULTIPLE ROLES FOR DIVERGENT SELECTION

(2008) Patrik Nosil et al.   EVOLUTION

Nucleotide Variation, Linkage Disequilibrium and Founder-Facilitated Speciation in Wild Populations of the Zebra Finch (Taeniopygia guttata)

(2008) C. N. Balakrishnan et al.   GENETICS

Revealing cryptic spatial patterns in genetic variability by a new multivariate method

(2008) T Jombart et al.   HEREDITY

Mitochondrial phylogeographies of five widespread Eurasian bird species

(2008) Robert M. Zink et al.   JOURNAL OF ORNITHOLOGY

Inferring the phylogeography and evolutionary history of the splendid fairy-wrenMalurus splendensfrom mitochondrial DNA and spectrophotometry

(2008) Anna M. Kearns et al.   JOURNAL OF AVIAN BIOLOGY

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY

Ancient phylogeographic divergence in southeastern Australia among populations of the widespread common froglet, Crinia signifera

(2008) R. Symula et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolutionary implications of non-neutral mitochondrial genetic variation

(2008) D DOWLING et al.   TRENDS IN ECOLOGY & EVOLUTION