Phylogenetic analysis of symbiont transmission mechanisms reveal evolutionary patterns in thermotolerance and host specificity that enhance bleaching resistance among vertically transmitted Symbiodinium

Revisiting the phylogeny of Zoanthidea (Cnidaria: Anthozoa): Staggered alignment of hypervariable sequences improves species tree inference

(2018) Timothy D. Swain   MOLECULAR PHYLOGENETICS AND EVOLUTION

Global warming and recurrent mass bleaching of corals

(2017) Terry P. Hughes et al.   NATURE

Consensus thermotolerance ranking for 110Symbiodiniumphylotypes: an exemplar utilization of a novel iterative partial-rank aggregation tool with broad application potential

(2016) Timothy D. Swain et al.   FUNCTIONAL ECOLOGY

Coral bleaching response index: a new tool to standardize and compare susceptibility to thermal bleaching

(2016) Timothy D. Swain et al.   GLOBAL CHANGE BIOLOGY

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals

(2016) Nadine M Boulotte et al.   ISME Journal

A Trait-Based Approach to Advance Coral Reef Science

(2016) Joshua S. Madin et al.   TRENDS IN ECOLOGY & EVOLUTION

Formation of the Isthmus of Panama

(2016) A. ODea et al.   Science Advances

Molecular homology and multiple-sequence alignment: an analysis of concepts and practice

(2015) David A. Morrison et al.   AUSTRALIAN SYSTEMATIC BOTANY

Species Richness on Coral Reefs and the Pursuit of Convergent Global Estimates

(2015) Rebecca Fisher et al.   CURRENT BIOLOGY

Symbiodinium thermophilum sp. nov., a thermotolerant symbiotic alga prevalent in corals of the world's hottest sea, the Persian/Arabian Gulf

(2015) B. C. C. Hume et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The cumulative impact of annual coral bleaching can turn some coral species winners into losers

(2014) Andréa G. Grottoli et al.   GLOBAL CHANGE BIOLOGY

Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals

(2014) Rachel N. Silverstein et al.   GLOBAL CHANGE BIOLOGY

Community dynamics and physiology ofSymbiodiniumspp. before, during, and after a coral bleaching event

(2014) Dustin W. Kemp et al.   LIMNOLOGY AND OCEANOGRAPHY

The influence of symbiont type on photosynthetic carbon flux in a model cnidarian–dinoflagellate symbiosis

(2014) Dorota E. Starzak et al.   MARINE BIOLOGY

A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models

(2014) Lam si Tung Ho et al.   SYSTEMATIC BIOLOGY

Multi-gene analysis ofSymbiodiniumdinoflagellates: a perspective on rarity, symbiosis, and evolution

(2014) Xavier Pochon et al.   PeerJ

The Epidemiology and Evolution of Symbionts with Mixed-Mode Transmission

(2013) Dieter Ebert   Annual Review of Ecology Evolution and Systematics

Nitrate competition in a coral symbiosis varies with temperature among Symbiodinium clades

(2013) David M Baker et al.   ISME Journal

Genetics and Morphology Characterize the DinoflagellateSymbiodinium voratum, n. sp., (Dinophyceae) as the Sole Representative ofSymbiodiniumClade E

(2013) Hae Jin Jeong et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Discordance of Species Trees with Their Most Likely Gene Trees: A Unifying Principle

(2013) N. A. Rosenberg   MOLECULAR BIOLOGY AND EVOLUTION

Modulation of Light-Enhancement to Symbiotic Algae by Light-Scattering in Corals and Evolutionary Trends in Bleaching

(2013) Luisa A. Marcelino et al.   PLoS One

The Occurrence of Mixed Infections ofSymbiodinium(Dinoflagellata) within Individual Hosts

(2012) Scott A. Fay et al.   JOURNAL OF PHYCOLOGY

The photokinetics of thermo-tolerance inSymbiodinium

(2012) Alison Jones et al.   Marine Ecology-An Evolutionary Perspective

Variations in Reactive Oxygen Release and Antioxidant Activity in Multiple Symbiodinium Types in Response to Elevated Temperature

(2012) Elizabeth S. McGinty et al.   MICROBIAL ECOLOGY

EvolView, an online tool for visualizing, annotating and managing phylogenetic trees

(2012) Huangkai Zhang et al.   NUCLEIC ACIDS RESEARCH

From Parent to Gamete: Vertical Transmission of Symbiodinium (Dinophyceae) ITS2 Sequence Assemblages in the Reef Building Coral Montipora capitata

(2012) Jacqueline L. Padilla-Gamiño et al.   PLoS One

Transmission Mode Predicts Specificity and Interaction Patterns in Coral-Symbiodinium Networks

(2012) Nicholas S. Fabina et al.   PLoS One

Revisiting the winners and the losers a decade after coral bleaching

(2011) R van Woesik et al.   MARINE ECOLOGY PROGRESS SERIES

Genotypic diversity and spatial-temporal distribution of Symbiodinium clones in an abundant reef coral

(2011) DANIEL T. PETTAY et al.   MOLECULAR ECOLOGY

GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses

(2011) ERIK C. FRANKLIN et al.   Molecular Ecology Resources

Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping

(2011) Todd C. LaJeunesse et al.   PLoS One

Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genusSymbiodinium

(2010) Todd C. LaJeunesse et al.   JOURNAL OF BIOGEOGRAPHY

The evolution of mutualism

(2010) E. G. LEIGH Jr   JOURNAL OF EVOLUTIONARY BIOLOGY

Coral host transcriptomic states are correlated withSymbiodiniumgenotypes

(2010) M. K. DeSALVO et al.   MOLECULAR ECOLOGY

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i

(2010) Xavier Pochon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Potential Costs of Acclimatization to a Warmer Climate: Growth of a Reef Coral with Heat Tolerant vs. Sensitive Symbiont Types

(2010) Alison Jones et al.   PLoS One

Environmental Symbiont Acquisition May Not Be the Solution to Warming Seas for Reef-Building Corals

(2010) Mary Alice Coffroth et al.   PLoS One

Phylogenetic signal and linear regression on species data

(2010) Liam J. Revell   Methods in Ecology and Evolution

Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals

(2009) Andrew H. Baird et al.   Annual Review of Ecology Evolution and Systematics

Juvenile corals can acquire more carbon from high-performance algal symbionts

(2009) N. E. Cantin et al.   CORAL REEFS

Onset of symbiosis and distribution patterns of symbiotic dinoflagellates in the larvae of scleractinian corals

(2009) Saki Harii et al.   MARINE BIOLOGY

Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral 'bleaching' event

(2009) T. C. LaJeunesse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic Logistic Regression for Binary Dependent Variables

(2009) Anthony R. Ives et al.   SYSTEMATIC BIOLOGY

Symbiont acquisition strategy drives host–symbiont associations in the southern Great Barrier Reef

(2008) M. Stat et al.   CORAL REEFS

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

Coral bleaching, bleaching-induced mortality, and the adaptive significance of the bleaching response

(2008) Ross J. Jones   MARINE BIOLOGY

Optimal Data Partitioning and a Test Case for Ray-Finned Fishes (Actinopterygii) Based on Ten Nuclear Loci

(2008) Chenhong Li et al.   SYSTEMATIC BIOLOGY