Complete Genome Sequences from Three Genetically Distinct Strains Reveal High Intraspecies Genetic Diversity in the Microsporidian Encephalitozoon cuniculi

Extremely Reduced Levels of Heterozygosity in the Vertebrate Pathogen Encephalitozoon cuniculi

(2013) Mohammed Selman et al.   EUKARYOTIC CELL

Evolutionary Implications of Horizontal Gene Transfer

(2012) Michael Syvanen   Annual Review of Genetics

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth

(2012) C. A. Cuomo et al.   GENOME RESEARCH

Comparative genome analysis of two Cryptosporidium parvum isolates with different host range

(2012) Giovanni Widmer et al.   INFECTION GENETICS AND EVOLUTION

Population genetic analysis of Enterocytozoon bieneusi in humans

(2012) Wei Li et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum

(2012) Daniel E Neafsey et al.   NATURE GENETICS

Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites

(2012) J.-F. Pombert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic diversity of the human intestinal parasite Entamoeba histolytica

(2012) Gareth D Weedall et al.   GENOME BIOLOGY

Genetic diversity among microsporidian isolates from the silkworm, Bombyx mori, as revealed by randomly amplified polymorphic DNA (RAPD) markers

(2011) B. Surendra Nath et al.   ACTA PARASITOLOGICA

Evidence for a high mutation rate at rapidly evolving yeast centromeres

(2011) Douda Bensasson   BMC EVOLUTIONARY BIOLOGY

Diversity of Nosema associated with bumblebees (Bombus spp.) from China

(2011) Jilian Li et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

RATT: Rapid Annotation Transfer Tool

(2011) Thomas D. Otto et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Genome Evolution in the Eremothecium Clade of the Saccharomyces Complex Revealed by Comparative Genomics

(2011) Jürgen Wendland et al.   G3-Genes Genomes Genetics

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Parallelization of the MAFFT multiple sequence alignment program

(2010) Kazutaka Katoh et al.   BIOINFORMATICS

Polymorphism and recombination for rDNA in the putatively asexual microsporidian Nosema ceranae , a pathogen of honeybees

(2010) Soledad Sagastume et al.   ENVIRONMENTAL MICROBIOLOGY

Chromosomal G + C Content Evolution in Yeasts: Systematic Interspecies Differences, and GC-Poor Troughs at Centromeres

(2010) Denise B. Lynch et al.   Genome Biology and Evolution

The Human Microsporidian Encephalitozoon hellem Synthesizes Two Spore Wall Polymorphic Proteins Useful for Epidemiological Studies

(2010) V. Polonais et al.   INFECTION AND IMMUNITY

Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies

(2010) Sébastien Boisvert et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species

(2010) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

Evolution of the sex-Related Locus and Genomic Features Shared in Microsporidia and Fungi

(2010) Soo Chan Lee et al.   PLoS One

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microsporidiosis: Enterocytozoon bieneusi in domesticated and wild animals

(2010) Mónica Santín et al.   RESEARCH IN VETERINARY SCIENCE

The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis

(2010) Nicolas Corradi et al.   Nature Communications

Tablet--next generation sequence assembly visualization

(2009) I. Milne et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Host-specific segregation of ribosomal nucleotide sequence diversity in the microsporidian Enterocytozoon bieneusi

(2009) Giovanni Widmer et al.   INFECTION GENETICS AND EVOLUTION

Enterocytozoon bieneusiGenotype Nomenclature Based on the Internal Transcribed Spacer Sequence: A Consensus

(2009) MÓNICA SANTÍN et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

A New Encephalitozoon Species (Microsporidia) Isolated from the Lubber Grasshopper, Romalea microptera (Beauvois) (Orthoptera: Romaleidae)

(2009) Carlos E. Lange et al.   JOURNAL OF PARASITOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae

(2009) Joseph Schacherer et al.   NATURE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi

(2008) Anastasios D. Tsaousis et al.   NATURE

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS