Small nucleolar RNAs and RNA-guided post-transcriptional modification

Inducing nonsense suppression by targeted pseudouridylation

(2012) Chao Huang et al.   Nature Protocols

The box C/D sRNP dimeric architecture is conserved across domain Archaea

(2012) K. R. Bower-Phipps et al.   RNA

YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops

(2012) N. J. Baird et al.   RNA

Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features

(2012) D. L. Bernick et al.   RNA

SNOntology: Myriads of novel snornas or just a mirage?

(2011) Julia A Makarova et al.   BMC GENOMICS

Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing

(2011) Robert Willem van Nues et al.   EMBO JOURNAL

The H/ACA RNP assembly factor SHQ1 functions as an RNA mimic

(2011) H. Walbott et al.   GENES & DEVELOPMENT

Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase

(2011) S. Li et al.   GENES & DEVELOPMENT

The Human Genome Retains Relics of Its Prokaryotic Ancestry: Human Genes of Archaebacterial and Eubacterial Origin Exhibit Remarkable Differences

(2011) David Alvarez-Ponce et al.   Genome Biology and Evolution

Structure of H/ACA RNP Protein Nhp2p Reveals Cis/Trans Isomerization of a Conserved Proline at the RNA and Nop10 Binding Interface

(2011) Bon-Kyung Koo et al.   JOURNAL OF MOLECULAR BIOLOGY

Converting nonsense codons into sense codons by targeted pseudouridylation

(2011) John Karijolich et al.   NATURE

Structural basis for site-specific ribose methylation by box C/D RNA protein complexes

(2011) Jinzhong Lin et al.   NATURE

Transcriptome-wide discovery of circular RNAs in Archaea

(2011) Miri Danan et al.   NUCLEIC ACIDS RESEARCH

Loss of ribosomal RNA modification causes developmental defects in zebrafish

(2011) Sayomi Higa-Nakamine et al.   NUCLEIC ACIDS RESEARCH

Letter from the Editor

(2011) Renée Schroeder et al.   RNA Biology

Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii

(2011) I. K. Blaby et al.   RNA

The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA

(2011) Nicholas J. Watkins et al.   Wiley Interdisciplinary Reviews-RNA

Nucleolar RNPs: from genes to functional snoRNAs in plants

(2010) Julie Rodor et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

PLEXY: efficient target prediction for box C/D snoRNAs

(2010) Stephanie Kehr et al.   BIOINFORMATICS

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

(2010) Shivendra Kishore et al.   HUMAN MOLECULAR GENETICS

The Spatial-Functional Coupling of Box C/D and C'/D' RNPs Is an Evolutionarily Conserved Feature of the Eukaryotic Box C/D snoRNP Nucleotide Modification Complex

(2010) G. Qu et al.   MOLECULAR AND CELLULAR BIOLOGY

Analysis of Human Small Nucleolar RNAs (snoRNA) and the Development of snoRNA Modulator of Gene Expression Vectors

(2010) Motoharu Ono et al.   MOLECULAR BIOLOGY OF THE CELL

Box H/ACA Small Ribonucleoproteins

(2010) Tamás Kiss et al.   MOLECULAR CELL

Rfam: Wikipedia, clans and the "decimal" release

(2010) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs

(2010) Markus Brameier et al.   NUCLEIC ACIDS RESEARCH

Ribosomal protein L7Ae is a subunit of archaeal RNase P

(2010) I.-M. Cho et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNAsnoop: efficient target prediction for H/ACA snoRNAs

(2009) Hakim Tafer et al.   BIOINFORMATICS

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

Eukaryotic snoRNAs: A paradigm for gene expression flexibility

(2009) Giorgio Dieci et al.   GENOMICS

Many roads to maturity: microRNA biogenesis pathways and their regulation

(2009) Julia Winter et al.   NATURE CELL BIOLOGY

Synthetic translational regulation by an L7Ae–kink-turn RNP switch

(2009) Hirohide Saito et al.   Nature Chemical Biology

Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis

(2009) Ho-Ming Chen et al.   NUCLEIC ACIDS RESEARCH

Small RNAs derived from snoRNAs

(2009) R. J. Taft et al.   RNA

Signature amino acids enable the archaeal L7Ae box C/D RNP core protein to recognize and bind the K-loop RNA motif

(2009) K. T. Gagnon et al.   RNA

MicroRNAs with a nucleolar location

(2009) J. C. Ritland Politz et al.   RNA

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

(2009) C. Cole et al.   RNA

A Dimeric Structure for Archaeal Box C/D Small Ribonucleoproteins

(2009) F. Bleichert et al.   SCIENCE

Expression and Processing of a Small Nucleolar RNA from the Epstein-Barr Virus Genome

(2009) Roland Hutzinger et al.   PLoS Pathogens

Mass spectrometry of the fifth nucleoside: A review of the identification of pseudouridine in nucleic acids

(2008) Anita Durairaj et al.   ANALYTICA CHIMICA ACTA

Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes

(2008) Inna Myslyuk et al.   BMC BIOINFORMATICS

The post-transcriptional steps of eukaryotic ribosome biogenesis

(2008) A. K. Henras et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The Hsp90 chaperone controls the biogenesis of L7Ae RNPs through conserved machinery

(2008) Séverine Boulon et al.   JOURNAL OF CELL BIOLOGY

Trypanosoma brucei Spliced Leader RNA Maturation by the Cap 1 2'-O-Ribose Methyltransferase and SLA1 H/ACA snoRNA Pseudouridine Synthase Complex

(2008) J. R. Zamudio et al.   MOLECULAR AND CELLULAR BIOLOGY

A Human snoRNA with MicroRNA-Like Functions

(2008) Christine Ender et al.   MOLECULAR CELL

Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster

(2008) Trilochan Sahoo et al.   NATURE GENETICS

Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs

(2008) Sébastien Muller et al.   NUCLEIC ACIDS RESEARCH

snoRNA, a Novel Precursor of microRNA in Giardia lamblia

(2008) Ashesh A. Saraiya et al.   PLoS Pathogens

snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions

(2007) Peter S. Bazeley et al.   GENE