Geochemical, metagenomic and metaproteomic insights into trace metal utilization by methane-oxidizing microbial consortia in sulphidic marine sediments

Methanogenic capabilities of ANME-archaea deduced from13C-labelling approaches

(2013) Sebastian Bertram et al.   ENVIRONMENTAL MICROBIOLOGY

Proterozoic ocean redox and biogeochemical stasis

(2013) C. T. Reinhard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classifying the metal dependence of uncharacterized nitrogenases

(2013) Shawn E. McGlynn et al.   Frontiers in Microbiology

Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments

(2012) Runar Stokke et al.   ENVIRONMENTAL MICROBIOLOGY

Molybdenum reduction in a sulfidic lake: Evidence from X-ray absorption fine-structure spectroscopy and implications for the Mo paleoproxy

(2012) Tais W. Dahl et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Coupling a Detergent Lysis/Cleanup Methodology with Intact Protein Fractionation for Enhanced Proteome Characterization

(2012) Ritin Sharma et al.   JOURNAL OF PROTEOME RESEARCH

Identification of Ni-(l-His)2 as a substrate for NikABCDE-dependent nickel uptake in Escherichia coli

(2012) Peter T. Chivers et al.   Metallomics

TheStaphylococcus aureusOpp1 ABC transporter imports nickel and cobalt in zinc-depleted conditions and contributes to virulence

(2012) Laetitia Remy et al.   MOLECULAR MICROBIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A First Analysis of Metallome Biosignatures of Hyperthermophilic Archaea

(2012) Vyllinniskii Cameron et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Trace Metal Requirements for Microbial Enzymes Involved in the Production and Consumption of Methane and Nitrous Oxide

(2012) Jennifer B. Glass et al.   Frontiers in Microbiology

A metagenomic study of methanotrophic microorganisms in Coal Oil Point seep sediments

(2011) Othilde Håvelsrud et al.   BMC MICROBIOLOGY

New model for molybdenum behavior in euxinic waters

(2011) George R. Helz et al.   CHEMICAL GEOLOGY

Cellular uptake of molybdenum and tungsten

(2011) Wilfred R. Hagen   COORDINATION CHEMISTRY REVIEWS

The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation

(2011) A. V. Callaghan et al.   ENVIRONMENTAL MICROBIOLOGY

Vitamin B12 biosynthesis gene diversity in the Ross Sea: the identification of a new group of putative polar B12 biosynthesizers

(2011) Erin M. Bertrand et al.   ENVIRONMENTAL MICROBIOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

A late methanogen origin for molybdenum-dependent nitrogenase

(2011) E. S. BOYD et al.   Geobiology

Tungsten and Molybdenum Regulation of Formate Dehydrogenase Expression in Desulfovibrio vulgaris Hildenborough

(2011) S. M. da Silva et al.   JOURNAL OF BACTERIOLOGY

Analysis of vitamin B12in seawater and marine sediment porewater using ELISA

(2011) Qingzhi Zhu et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Redox speciation and early diagenetic behavior of dissolved molybdenum in sulfidic muds

(2011) Deli Wang et al.   MARINE CHEMISTRY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically

(2011) Seigo Shima et al.   NATURE

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

A Comparative Genomic Analysis of Energy Metabolism in Sulfate Reducing Bacteria and Archaea

(2011) Inês A. Cardoso Pereira et al.   Frontiers in Microbiology

Hydrogenases from Methanogenic Archaea, Nickel, a Novel Cofactor, and H2Storage

(2010) Rudolf K. Thauer et al.   Annual Review of Biochemistry

How to Make a Living by Exhaling Methane

(2010) James G. Ferry   Annual Review of Microbiology

dbTEU: a protein database of trace element utilization

(2010) Yan Zhang et al.   BIOINFORMATICS

Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A

(2010) Lars Rohlin et al.   BMC MICROBIOLOGY

Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

(2010) Karuna Chourey et al.   JOURNAL OF PROTEOME RESEARCH

A nickel ABC-transporter of Staphylococcus aureus is involved in urinary tract infection

(2010) Aurelia Hiron et al.   MOLECULAR MICROBIOLOGY

Microbial metalloproteomes are largely uncharacterized

(2010) Aleksandar Cvetkovic et al.   NATURE

The key nickel enzyme of methanogenesis catalyses the anaerobic oxidation of methane

(2010) Silvan Scheller et al.   NATURE

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

(2010) S. Sun et al.   NUCLEIC ACIDS RESEARCH

Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization

(2009) Yan Zhang et al.   BMC GENOMICS

Comparative Genomics of Trace Elements: Emerging Dynamic View of Trace Element Utilization and Function

(2009) Yan Zhang et al.   CHEMICAL REVIEWS

Nickel Homeostasis and Nickel Regulation: An Overview

(2009) Yanjie Li et al.   CHEMICAL REVIEWS

Genome sequence ofDesulfobacterium autotrophicumHRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide

(2009) Axel W. Strittmatter et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group

(2009) Anke Meyerdierks et al.   ENVIRONMENTAL MICROBIOLOGY

Coevolution of metal availability and nitrogen assimilation in cyanobacteria and algae

(2009) J. B. GLASS et al.   Geobiology

Oceanic nickel depletion and a methanogen famine before the Great Oxidation Event

(2009) Kurt O. Konhauser et al.   NATURE

Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia

(2009) A. E. Dekas et al.   SCIENCE

Effect of tungsten and molybdenum on growth of a syntrophic coculture of Syntrophobacter fumaroxidans and Methanospirillum hungatei

(2008) Caroline M. Plugge et al.   ARCHIVES OF MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Temporal evolution of methane cycling and phylogenetic diversity of archaea in sediments from a deep-sea whale-fall in Monterey Canyon, California

(2008) Shana K Goffredi et al.   ISME Journal

Shotgun metaproteomics of the human distal gut microbiota

(2008) Nathan C Verberkmoes et al.   ISME Journal

Genetic Analysis of the Methanol- and Methylamine-Specific Methyltransferase 2 Genes of Methanosarcina acetivorans C2A

(2008) A. Bose et al.   JOURNAL OF BACTERIOLOGY

A Novel Class of Modular Transporters for Vitamins in Prokaryotes

(2008) D. A. Rodionov et al.   JOURNAL OF BACTERIOLOGY

Molybdoproteomes and Evolution of Molybdenum Utilization

(2008) Yan Zhang et al.   JOURNAL OF MOLECULAR BIOLOGY

Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics

(2008) A. Pernthaler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

OCEANS: Elements and Evolution

(2008) A. D. Anbar   SCIENCE

New substrates for TonB-dependent transport: do we only see the ‘tip of the iceberg’?

(2008) Kristine Schauer et al.   TRENDS IN BIOCHEMICAL SCIENCES