Community differentiation and population enrichment of Sargasso Sea bacterioplankton in the euphotic zone of a mesoscale mode-water eddy

Identification of senescence and death inEmiliania huxleyiandThalassiosira pseudonana: Cell staining, chlorophyll alterations, and dimethylsulfoniopropionate (DMSP) metabolism

(2016) Daniel J. Franklin et al.   LIMNOLOGY AND OCEANOGRAPHY

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences

(2013) Kevin L Vergin et al.   ISME Journal

Microbial Functioning and Community Structure Variability in the Mesopelagic and Epipelagic Waters of the Subtropical Northeast Atlantic Ocean

(2012) Federico Baltar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Use of phytoplankton-derived dissolved organic carbon by different types of bacterioplankton

(2012) Hugo Sarmento et al.   ENVIRONMENTAL MICROBIOLOGY

Basin-scale patterns in the abundance of SAR11 subclades, marine Actinobacteria (OM1), members of the Roseobacter clade and OCS116 in the South Atlantic

(2012) Robert M. Morris et al.   ENVIRONMENTAL MICROBIOLOGY

Tracking differential incorporation of dissolved organic carbon types among diverse lineages of Sargasso Sea bacterioplankton

(2012) Craig E. Nelson et al.   ENVIRONMENTAL MICROBIOLOGY

Daytime, growth phase and nitrate availability dependent variations of dimethylsulfoniopropionate in batch cultures of the diatom Skeletonema marinoi

(2012) Astrid Spielmeyer et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Seasonality in Ocean Microbial Communities

(2012) S. J. Giovannoni et al.   SCIENCE

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

(2011) Chris L Dupont et al.   ISME Journal

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

(2011) Hamidreza Chitsaz et al.   NATURE BIOTECHNOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Mesoscale eddies: hotspots of prokaryotic activity and differential community structure in the ocean

(2010) Federico Baltar et al.   ISME Journal

Complete Genome Sequence of "Candidatus Puniceispirillum marinum" IMCC1322, a Representative of the SAR116 Clade in the Alphaproteobacteria

(2010) H.-M. Oh et al.   JOURNAL OF BACTERIOLOGY

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic diversity of bacterial communities in South China Sea mesoscale cyclonic eddy perturbations

(2010) Yao Zhang et al.   RESEARCH IN MICROBIOLOGY

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

(2010) Patrick D. Schloss   PLoS Computational Biology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Role of mesoscale cyclonic eddies in the distribution and activity of Archaea and Bacteria in the South China Sea

(2009) Y Zhang et al.   AQUATIC MICROBIAL ECOLOGY

Seasonality and vertical structure of microbial communities in an ocean gyre

(2009) Alexander H Treusch et al.   ISME Journal

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dimethylsulfide production in Sargasso Sea eddies

(2008) K.E. Bailey et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

The distributions of, and relationship between, 3He and nitrate in eddies

(2008) W.J. Jenkins et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Elevated biomass of mesozooplankton and enhanced fecal pellet flux in cyclonic and mode-water eddies in the Sargasso Sea

(2008) Sarah A. Goldthwait et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Nutrient flux into an intense deep chlorophyll layer in a mode-water eddy

(2008) James R. Ledwell et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Mesoscale physical–biological–biogeochemical linkages in the open ocean: An introduction to the results of the E-Flux and EDDIES programs

(2008) Claudia R. Benitez-Nelson et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Particle fluxes associated with mesoscale eddies in the Sargasso Sea

(2008) K.O. Buesseler et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Nutrient distributions in baroclinic eddies of the oligotrophic North Atlantic and inferred impacts on biology

(2008) Qian P. Li et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Photosynthetic community responses to upwelling in mesoscale eddies in the subtropical North Atlantic and Pacific Oceans

(2008) Thomas S. Bibby et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Microbial dynamics in cyclonic and anticyclonic mode-water eddies in the northwestern Sargasso Sea

(2008) Courtney S. Ewart et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Phenology of high-elevation pelagic bacteria: the roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities

(2008) Craig E Nelson   ISME Journal

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea

(2008) Craig A Carlson et al.   ISME Journal

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS