期刊
JOURNAL OF PROTEOMICS
卷 129, 期 -, 页码 56-62出版社
ELSEVIER
DOI: 10.1016/j.jprot.2015.06.015
关键词
Proteomics; Conversion tool; ProCon; mzIdentML; PRIDE; ProteomeXchange
资金
- European Union [LSHG-CT-2006-036814, 260558]
- Deutsche Gesetzliche Unfallversicherung (DGUV) [617.0 FP 339A]
- P.U.R.E.
- German Federal Ministry of Education and Research (BMBF) [FKZ 031 A 534A]
- project of Nordrhein-Westfalen
- federal state of Germany
With the growing amount of experimental data produced in proteomics experiments and the requirements/recommendations of journals in the proteomics field to publicly make available data described in papers, a need for long-term storage of proteomics data in public repositories arises. For such an upload one needs proteomics data in a standardized format. Therefore, it is desirable, that the proprietary vendor's software will integrate in the future such an export functionality using the standard formats for proteomics results defined by the HUPO-PSI group. Currently not all search engines and analysis tools support these standard formats. In the meantime there is a need to provide user-friendly free-to-use conversion tools that can convert the data into such standard formats in order to support wet-lab scientists in creating proteomics data files ready for upload into the public repositories. ProCon is such a conversion tool written in Java for conversion of proteomics identification data into standard formats mzIdentML and Pride XML. It allows the conversion of Sequest (TM)/Comet.out files, of search results from the popular and often used ProteomeDiscoverer (R) 1.x (x = versions 1.1 to 1.4) software and search results stored in the LIMS systems ProteinScape 1.3 and 2.1 into mzIdentML and PRIDE XML This article is part of a Special Issue entitled: Computational Proteomics. (C) 2015 Published by Elsevier B.V.
作者
我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。
推荐
暂无数据