4.5 Editorial Material

WHY WE NEED MORE ALGAL GENOMES

期刊

JOURNAL OF PHYCOLOGY
卷 51, 期 1, 页码 1-5

出版社

WILEY
DOI: 10.1111/jpy.12267

关键词

-

向作者/读者索取更多资源

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.5
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Genetics & Heredity

Complete plastid genome of Cumathamnion serrulatum (Ceramiales, Rhodophyta)

Hocheol Kim, Do-Yun Lee, Chang Wan Seo, Chung Hyun Cho, Hwan Su Yoon

Summary: The study reported the complete plastid genome of Cumathamnion serrulatum, including gene content, structure, and the phylogenetic relationship with other species.

MITOCHONDRIAL DNA PART B-RESOURCES (2021)

Article Microbiology

Adaptation and Codon-Usage Preference of Apple and Pear-Infecting Apple Stem Grooving Viruses

Jaedeok Kim, Aamir Lal, Eui-Joon Kil, Hae-Ryun Kwak, Hwan-Su Yoon, Hong-Soo Choi, Mikyeong Kim, Muhammad Ali, Sukchan Lee

Summary: The study identified different isolates of Apple stem grooving virus in agricultural fields in South Korea, showing phylogenetic separation based on their host species rather than geography. Further analysis indicated that the virus followed host adaptation influenced by the host codon usage.

MICROORGANISMS (2021)

Article Biology

Genome of the world's smallest flowering plant, Wolffia australiana, helps explain its specialized physiology and unique morphology

Halim Park, Jin Hwa Park, Yejin Lee, Dong U. Woo, Ho Hwi Jeon, Yeon Woo Sung, Sangrea Shim, Sang Hee Kim, Kyun Oh Lee, Jae-Yean Kim, Chang-Kug Kim, Debashish Bhattacharya, Hwan Su Yoon, Yang Jae Kang

Summary: The study generated the reference genome of Wolffia australiana and identified genome-wide features that contribute to its unique physiology, as well as extensive genome rearrangements linked to its specialized aquatic adaptations. This helps explain the distinct characteristics and evolutionary trajectory of this intriguing plant species.

COMMUNICATIONS BIOLOGY (2021)

Article Biology

Group II intron and repeat-rich red algal mitochondrial genomes demonstrate the dynamic recent history of autocatalytic RNAs

Dongseok Kim, JunMo Lee, Chung Hyun Cho, Eun Jeung Kim, Debashish Bhattacharya, Hwan Su Yoon

Summary: Our study of group II introns in Porphyridium mitogenomes demonstrates the dynamic nature of group II intron evolution, strongly supports the lateral movement of group II introns among diverse eukaryotes, and reveals their ability to proliferate once integrated into mitochondrial DNA.

BMC BIOLOGY (2022)

Article Plant Sciences

Gelidium rosulatum (Gelidiales, Rhodophyta), a new species of subtidal marine algae from Korea

Ga Hun Boo, Jeong Kwang Park, Kyu Sam Han, Hwan Su Yoon

Summary: A new species of Gelidium rosulatum from the subtidal zone in eastern Korea is described based on morphological observations and molecular analyses. The distinctness of the new species is revealed through phylogenetic analysis and it is closely related to other East Asian species and G. chilense.

PHYCOLOGIA (2022)

Article Plant Sciences

Ancient Tethyan Vicariance and Long-Distance Dispersal Drive Global Diversification and Cryptic Speciation in the Red Seaweed Pterocladiella

Ga Hun Boo, Frederik Leliaert, Line Le Gall, Eric Coppejans, Olivier De Clerck, Tu Van Nguyen, Claude E. Payri, Kathy Ann Miller, Hwan Su Yoon

Summary: This study investigated the globally distributed red algal genus Pterocladiella and revealed its cryptic diversity and the drivers of biogeographic patterns. The results showed that ancient Tethyan vicariance and long-distance dispersal shaped its current distribution patterns, and the Central American Seaway barrier played a significant role in the divergence of species. The study also highlighted the underestimation of global diversity in these crucial components of coastal ecosystems and provided evidence for the complex evolution of current species distributions.

FRONTIERS IN PLANT SCIENCE (2022)

Review Plant Sciences

Kelps in Korea: from population structure to aquaculture to poten- tial carbon sequestration

Eun Kyoung Hwang, Ga Hun Boo, Louis Graf, Charles Yarish, Hwan Su Yoon, Jang Kyun Kim

Summary: Korea is leading in kelp aquaculture, focusing on brown algae and kelp species. This review discusses the diversity, population structure, and genomics of kelps, as well as efforts in developing new cultivars, considering climate change and carbon sequestration. While the genetic diversity of brown algae decreases in cultivars, studies on population structure of kelp species such as Saccharina japonica are limited. To meet industry demands, more cultivars with specific traits should be developed, and cultivation technologies diversified for sustainable environmental and economic development.
Article Biotechnology & Applied Microbiology

Transcriptome analysis reveals the spatial and temporal differentiation of gene expression in the sporophyte of Undaria pinnatifida

Louis Graf, Younhee Shin, Ji Hyun Yang, Il Ki Hwang, Hwan Su Yoon

Summary: The study reveals clear spatial and temporal variation in the expression patterns and biological functions of genes in different tissues of brown algae.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2022)

Article Biodiversity Conservation

Species Diversity of Gelidium from Southern Madagascar Evaluated by an Integrative Taxonomic Approach

Ga Hun Boo, Line Le Gall, Il Ki Hwang, Florence Rousseau, Hwan Su Yoon

Summary: The diversity of red algae is increasing, and taxonomic and biogeographic studies are needed in untouched regions for a better understanding of climate changes. In this study, Gelidium specimens were examined using morphology and DNA sequencing, revealing the presence of three species in Madagascar. Gelidium leptum is a new species described here, while Gelidium sclerophyllum and Gelidium usmanghanii are previously reported species found in new locations. Phylogenetic analysis suggests that these three species diverged from different ancestors.

DIVERSITY-BASEL (2022)

Article Biochemistry & Molecular Biology

Genetic Diversity and Phylogeography of a Turf-Forming Cosmopolitan Marine Alga, Gelidium crinale (Gelidiales, Rhodo-Phyta)

Ga Hun Boo, Antonella Bottalico, Line Le Gall, Hwan Su Yoon

Summary: This study reveals the genetic diversity and phylogeography of the turf-forming red algae G. crinale. Results indicate that G. crinale has a widespread distribution and that its distribution has been shaped by Pleistocene relicts.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)

Article Plant Sciences

Revised classification of the Cyanidiophyceae based on plastid genome data with descriptions of the Cavernulicolales ord. nov. and Galdieriales ord. nov. (Rhodophyta)

Seung In Park, Chung Hyun Cho, Claudia Ciniglia, Tzu-Yen Huang, Shao-Lun Liu, Danilo E. Bustamante, Martha S. Calderon, Andres Mansilla, Timothy McDermott, Robert A. Andersen, Hwan Su Yoon

Summary: This study provides a systematic classification of the extremophilic red algal class Cyanidiophyceae, revealing hidden diversity and proposing four new orders, three new genera, five new species, and a new nomenclatural combination.

JOURNAL OF PHYCOLOGY (2023)

Article Plant Sciences

Algae obscura: The potential of rare species as model systems

Julia Van Etten, Luiz Felipe Benites, Timothy G. Stephens, Hwan Su Yoon, Debashish Bhattacharya

Summary: Model organism research has been valuable for understanding biological principles, but it has largely focused on abundant and easily cultivatable species, representing only a small fraction of biodiversity. This study highlights three rare algae with unique features, referred to as "algae obscura," which have become models for evolutionary research. Insights into horizontal gene transfer, microbial community dynamics, plastid endosymbiosis, and the origins of Archaeplastida have been gained from studying these underappreciated algae. The findings demonstrate the potential of these organisms to contribute to core hypotheses in the field and should be considered in future model system establishment.

JOURNAL OF PHYCOLOGY (2023)

Article Plant Sciences

DNA sequences as types: A discussion paper from the Special-purpose Committee established at the XIX International Botanical Congress in Shenzhen, China

Kevin R. Thiele, Wendy L. Applequist, Susanne S. Renner, Tom W. May, Ali A. Donmez, Quentin Groom, Samuli Lehtonen, Christine A. Maggs, Valery Malecot, Hwan Su Yoon

Summary: The Special-purpose Committee was established at the XIX International Botanical Congress in 2017 to investigate the possibility of using DNA sequences as types in the International Code of Nomenclature for algae, fungi, and plants. This paper provides background information, explores key issues related to typification, discusses the pros and cons of allowing DNA sequences as types, and suggests options for future discussion and recommendations.
Article Multidisciplinary Sciences

Origin of minicircular mitochondrial genomes in red algae

Yongsung Lee, Chung Hyun Cho, Chanyoung Noh, Ji Hyun Yang, Seung In Park, Yu Min Lee, John A. West, Debashish Bhattacharya, Kyubong Jo, Hwan Su Yoon

Summary: We report a multipartite circular mitochondrial genome in the Stylonematophyceae red algae, which encode one or two genes bounded by a specific cassette and a conserved constant region. Visualization using fluorescence microscope and scanning electron microscope confirms the circularity of these minicircles. These highly divergent mitogenomes exhibit reduced gene sets. The newly generated chromosome-level nuclear genome assembly of Rhodosorus marinus reveals the transfer of most mitochondrial ribosomal subunit genes to the nuclear genome. Recombination between minicircles and a unique gene inventory may explain the transition from a typical mitochondrial genome to minicircles. Our findings offer insight into minicircular organelle genome formation and highlight an extreme case of mitochondrial gene inventory reduction.

NATURE COMMUNICATIONS (2023)

Review Cell Biology

Extremophilic red algae as models for understanding adaptation to hostile environments and the evolution of eukaryotic life on the early earth

Julia Van Etten, Chung Hyun Cho, Hwan Su Yoon, Debashish Bhattacharya

Summary: This review summarizes the origin, taxonomy, genome biology, industrial applications, and use of Cyanidiophyceae as genetic models. The Cyanidiophyceae red algae have the ability to live in extreme environments and their genomes encode specialized enzymes. Commercial opportunities such as phytoremediation and efficient bioproduct production are discussed. Ongoing research with C. merolae genetics provides unique insights into algal biology and evolution.

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2023)

暂无数据