4.3 Article

AmpC β-lactamases in Escherichia coli: emergence of CMY-2-producing virulent phylogroup D isolates belonging mainly to STs 57, 115, 354, 393, and 420, and phylogroup B2 isolates belonging to the international clone O25b-ST131

期刊

出版社

ELSEVIER SCIENCE INC
DOI: 10.1016/j.diagmicrobio.2010.02.008

关键词

AmpC; Escherichia coli; CMY-2

资金

  1. Ministerio de Ciencia e Innovacion
  2. Instituto de Salud Carlos III [MPY 022/09]
  3. Spanish Network for the Research in Infectious Diseases [C03/14, RD06/0008]
  4. Fondo de Investigaciones Sanitarias [PI040837, PI09/917]
  5. Direccion General de Salud Publica
  6. Ministry of Health, Spain [1429/05-11]

向作者/读者索取更多资源

Cephalosporins resistance is increasing in Escherichia coli in Spain. We characterize infections by E. coli with reduced susceptibility to third-generation cephalosporins (3GCs) with the AmpC phenotype. Between January 2004 and March 2007, 121 E. coli isolates with the AmpC phenotype were collected (4.8% of all the 2538 E. coli isolates with reduced susceptibility to 3GCs). These isolates were further characterized by clinical and molecular analysis. Plasmid-encoded ampC genes were detected in 46 (38%) isolates (43 CMY-2); 75 isolates (62%) had modifications in the chromosomal ampC promoter region (c-AmpC). CMY-2 producers belonged primarily to the more virulent phylogroup D (48.4%), whereas most isolates of c-AmpC belonged to phylogroup A (56.4%). Bacteremia and infections in children were more frequently produced by CMY-2 producers. CMY-2-producing phylogroup D E. coli belonged to 8 multilocus sequence typing types. Three CMY-2 producers belonged to O25b/ST131/B2 clone. Infections caused by E. coli with the AmpC phenotype may be spreading primarily because of CMY-2-producing phylogroup D isolates, although this enzyme was also detected in the O25b/ST131/B2 clone. (C) 2010 Elsevier Inc. All rights reserved.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.3
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Microbiology

Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain

Elisenda Miro, John W. A. Rossen, Monika A. Chlebowicz, Dag Harmsen, Sylvain Brisse, Virginie Passet, Ferran Navarro, Alex W. Friedrich, S. Garcia-Cobos

FRONTIERS IN MICROBIOLOGY (2020)

Article Infectious Diseases

Cross-border spread of and blaNDM-1- and blaOXA-48 positive Klebsiella pneumoniae: a European collaborative analysis of whole genome sequencing and epidemiological data, 2014 to 2019

Catherine Ludden, Felix Lotsch, Erik Alm, Narender Kumar, Karin Johansson, Barbara Albiger, Te-Din Huang, Olivier Denis, Anette M. Hammerum, Henrik Hasman, Jari Jalava, Kati Raisanen, Laurent Dortet, Agnes B. Jousset, Soren Gatermann, Sebastian Haller, Martin Cormican, Wendy Brennan, Maria Del Grosso, Monica Monaco, Leo Schouls, Orjan Samuelsen, Mateja Pirs, Tjasa Cerar, Jesus Oteo-Iglesias, Maria Perez-Vazquez, Karin Sjostrom, Petra Edquist, Katie L. Hopkins, Marc J. Struelens, Daniel Palm, Dominique L. Monnet, Anke Kohlenberg

EUROSURVEILLANCE (2020)

Article Infectious Diseases

Interregional spread in Spain of linezolid-resistant Enterococcus spp. isolates carrying the optrA and poxtA genes

Zaira Moure, Noelia Lara, Mercedes Marin, Pedro J. Sola-Campoy, Veronica Bautista, Frederic Gomez-Bertomeu, Cristina Gomez-Dominguez, Maria Perez-Vazquez, Belen Aracil, Jose Campos, Emilia Cercenado, Jesus Oteo-Iglesias

INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2020)

Letter Infectious Diseases

Emergence of blood infections caused by carbapenemase-producing Klebsiella pneumoniae ST307 in Spain

Jesus Oteo-Iglesias, Maria Perez-Vazquez, Pedro Sola Campoy, Zaira Moure, Isabel Sanchez Romero, Rosario Sanchez Benito, Esteban Aznar, Cristina Seral, Jose Ramon Pano-Pardo, Alicia Avila, Noelia Lara, Veronica Bautista, Belen Aracil, Jose Campos

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2020)

Article Multidisciplinary Sciences

Kpi, a chaperone-usher pili system associated with the worldwide-disseminated high-risk clone Klebsiella pneumoniae ST-15

Eva Gato, Juan Carlos Vazquez-Ucha, Soraya Rumbo-Feal, Laura Alvarez-Fraga, Juan A. Vallejo, Marta Martinez-Guitian, Alejandro Beceiro, Jose Ramos Vivas, Pedro J. Sola Campoy, Maria Perez-Vazquez, Jesus Oteo Iglesias, Bruno Kotska Rodino-Janeiro, Antonio Romero, Margarita Poza, German Bou, Astrid Perez

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Environmental Sciences

Farm dust resistomes and bacterial microbiomes in European poultry and pig farms

Roosmarijn E. C. Luiken, Liese Van Gompel, Alex Bossers, Patrick Munk, Philip Joosten, Rasmus Borup Hansen, Berith E. Knudsen, Silvia Garcia-Cobos, Jeroen Dewulf, Frank M. Aarestrup, Jaap A. Wagenaar, Lidwien A. M. Smit, Dik J. Mevius, Dick J. J. Heederik, Heike Schmitt

ENVIRONMENT INTERNATIONAL (2020)

Article Environmental Sciences

Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: A metagenome-wide cross-sectional study

Liese Van Gompel, Roosmarijn E. C. Luiken, Rasmus B. Hansen, Patrick Munk, Martijn Bouwknegt, Lourens Heres, Gerdit D. Greve, Peter Scherpenisse, Betty G. M. Jongerius-Gortemaker, Monique H. G. Tersteeg-Zijderveld, Silvia Garcia-Cobos, Wietske Dohmen, Alejandro Dorado-Garcia, Jaap A. Wagenaar, Bert A. P. Urlings, Frank M. Aarestrup, Dik J. Mevius, Dick J. J. Heederik, Heike Schmitt, Alex Bossers, Lidwien A. M. Smit

ENVIRONMENT INTERNATIONAL (2020)

Article Infectious Diseases

Predominance of CTX-M-15-producing ST131 strains among ESBL-producing Escherichia coli isolated from asylum seekers in the Netherlands

Christina Louka, Sofanne J. Ravensbergen, Alewijn Ott, Xuewei Zhou, Silvia Garcia-Cobos, Alexander W. Friedrich, Spyros Pournaras, Sigrid Rosema, John W. Rossen, Ymkje Stienstra, Erik Bathoorn

Summary: The study found that ESBL-E. coli strains isolated from asylum seekers, mainly from Syria and Iraq, were predominantly classified as ST131 and ST10, with the main resistance genes being bla(CTX_M-15) and bla(TEM-1B). No mcr or carbapenemase genes were detected, and minor clustering was observed among the asylum seeker population.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2021)

Article Infectious Diseases

Characterization of OXA-48-producing Klebsiella oxytoca isolates from a hospital outbreak in Tunisia

Julia Guzman-Puche, Rim Jenayeh, Maria Perez-Vazquez, Manuel-Causse, Ferjani Asma, Boukadida Jalel, Jesus Oteo-Iglesias, Luis Martinez-Martinez

Summary: This study aimed to characterize OXA-48-producing Klebsiella oxytoca isolates causing an outbreak in a Tunisian hospital. The isolates were all positive for OXA-48 and negative for ESBL, carrying the bla(OXA-48) gene on a ca.63 kb IncL plasmid and belonging to the new ST220. These findings suggest challenges in detecting OXA-48 and a risk of overlooked production in K. oxytoca, potentially contributing to its hidden spread.

JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE (2021)

Article Microbiology

Effects of Clinical Wastewater on the Bacterial Community Structure from Sewage to the Environment

Ilse Verburg, H. Pieter J. van Veelen, Karola Waar, John W. A. Rossen, Alex W. Friedrich, Lucia Hernandez Leal, Silvia Garcia-Cobos, Heike Schmitt

Summary: The study found that the overall bacterial composition differed between clinical wastewater and non-clinical wastewater, but target taxa were not enriched in clinical wastewater. This suggests that treating clinical wastewater before release into the wastewater system would only remove a minor part of the total potential pathogen load. Most target taxa showed a decreased relative abundance after wastewater treatment, yet all investigated taxa were detected in 68% of the treated effluent samples-meaning that these bacteria are continuously released into the receiving surface water. Temporal variation was observed for specific taxa in surface water, but not in wastewater samples.

MICROORGANISMS (2021)

Article Radiology, Nuclear Medicine & Medical Imaging

Lung infection with nontuberculous mycobacteria

C. Cano Rodriguez, E. Castaner Gonzalez, M. Andreu Magarolas, X. Gallardo Cistare, A. Gonzalez Lopez, O. Cuevas Lobato, M. Gallego Diaz

Summary: This study retrospectively analyzed the epidemiology and CT findings of nontuberculous mycobacterial lung infections in 131 patients and evaluated the outcomes of different treatment approaches. The results showed that the diagnosis of nontuberculous mycobacterial lung infections is complex, and the clinical and radiological findings are often nonspecific. Additionally, a significant percentage of patients may have concomitant infections with other microorganisms.

RADIOLOGIA (2023)

Article Microbiology

Phenotypic and molecular characterization of IMP-producing Enterobacterales in Spain: Predominance of IMP-8 in Klebsiella pneumoniae and IMP-22 in Enterobacter roggenkampii

Javier E. Canada-Garcia, Natalin Grippo, Eva Ramirez de Arellano, Veronica Bautista, Noelia Lara, Ana Maria Navarro, Teresa Cabezas, Nora Mariela Martinez-Ramirez, Silvia Garcia-Cobos, Jorge Calvo, Emilia Cercenado, Belen Aracil, Maria Perez-Vazquez, Jesus Oteo-Iglesias

Summary: This study analyzed the genomic and phenotypic characteristics of IMP-producing Enterobacterales (IMP-Ent) isolates circulating in Spain. The most frequently detected strains were IMP-8-producing Klebsiella pneumoniae (IMP-Kpn) and IMP-22-producing Enterobacter roggenkampii. However, some IMP-producing strains showed false negative results in EDTA or dipicolinic acid inhibition tests.

FRONTIERS IN MICROBIOLOGY (2022)

Article Microbiology

Staphylococcus aureus populations from the gut and the blood are not distinguished by virulence traits-a critical role of host barrier integrity

Elisa J. M. Raineri, Sandra Maass, Min Wang, Siobhan Brushett, Laura Palma M. Medina, Neus Sampol Escandell, Dania Altulea, Erwin Raangs, Anne de Jong, Elias Vera Murguia, Edward J. Feil, Alex W. Friedrich, Girbe Buist, Dorte Becher, Silvia Garcia-Cobos, Natacha Couto, Jan Maarten van Dijl

Summary: Goldylococcus aureus can invade the bloodstream through the gut, causing serious infections, and the mechanisms behind this process were not well understood. In this study, genome-wide association studies were conducted to compare the genetic sequences of gut and bloodstream isolates, along with proteomic characterization and infection models. The results showed that even isolates with the same sequence type can have genetic and proteomic differences. It was also found that bloodstream isolates did not necessarily possess higher virulence potential. The integrity of the gut epithelial layer may determine the invasiveness of staphylococci from the gut microbiome.

MICROBIOME (2022)

Article Infectious Diseases

Carbapenemase-Producing Klebsiella pneumoniae in COVID-19 Intensive Care Patients: Identification of IncL-VIM-1 Plasmid in Previously Non-Predominant Sequence Types

Javier E. Canada-Garcia, Eva Ramirez de Arellano, Miguel Jimenez-Orellana, Esther Viedma, Aida Sanchez, Almudena Alhambra, Jennifer Villa, Alberto Delgado-Iribarren, Veronica Bautista, Noelia Lara, Silvia Garcia-Cobos, Belen Aracil, Emilia Cercenado, Maria Perez-Vazquez, Jesus Oteo-Iglesias

Summary: During the COVID-19 pandemic, the number of ICU patients coinfected by nosocomial microorganisms increased. A study analyzed carbapenemase-producing Klebsiella pneumoniae (CP-Kpn) isolates from COVID-19 ICU patients and compared them to pre-pandemic populations. The study found similarities between the pandemic and pre-pandemic CP-Kpn populations, but there was an increase in VIM-1 isolates associated with atypical sequence types during the pandemic, suggesting the need for additional monitoring.

ANTIBIOTICS-BASEL (2023)

Article Infectious Diseases

A genetic cluster of MDR Enterobacter cloacae complex ST78 harbouring a plasmid containing blaVIM-1 and mcr-9 in the Netherlands

Antoni P. A. Hendrickx, Sylvia Debast, Maria Perez-Vazquez, Annelot F. Schoffelen, Daan W. Notermans, Fabian Landman, Cornelia C. H. Wielders, Javier E. Canada Garcia, Jacky Flipse, Angela de Haan, Sandra Witteveen, Marga van Santen-Verheuvel, Sabine C. de Greeff, Ed Kuijper, Leo M. Schouls

Summary: The genetic cluster of Enterobacter cloacae complex isolates collected in Dutch national surveillance from 2015-20 revealed a lineage producing carbapenemase, carrying multiple antibiotic resistance genes. The EclCluster-013 isolates, originating from three different hospitals in the Netherlands, belonged to the globally disseminated ST78 lineage and carried an IncH12 plasmid containing bla(VIM-1) carbapenemase and the novel mcr-9 colistin resistance gene. These MDR strains were susceptible to meropenem and colistin.

JAC-ANTIMICROBIAL RESISTANCE (2021)

Article Infectious Diseases

Diagnosis of Helicobacter pylori infection of the gastric biopsy by rapid urease test, histopathology and Raman spectroscopy

Syed Iqbal Haider, Naeem Akhtar, Muhammad Saleem, Sheraz Ahmed, Shiza Nadeem, Maham Amjad, Faiz Ul Haq

Summary: This study aimed to compare the diagnostic potential of Raman spectroscopy with rapid urease test and histopathology in diagnosing H. pylori infection. The results showed that Raman spectroscopy had higher sensitivity, accuracy, and specificity compared to the rapid urease test and histopathology. This study demonstrates the applicability of Raman spectroscopy as an innovative detection tool for molecular diagnosis of H. pylori infection in gastritis.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Editorial Material Infectious Diseases

Validation of dried blood spot for serological diagnosis of Hepatitis B and C: a multicentric study

Arati Mane, Reshu Agarwal, Meenu Bajpai, Suvarna Sane, Pallavi Vidhate, Partha Rakshit, Preeti Madan, Hema Gogia, Priya Abraham, Sandhya Kabra, Ekta Gupta

Summary: The present study aimed to determine the diagnostic performance of dried blood spot (DBS) for HBsAg and anti-HCV detection using CLIA in three different laboratories across India. DBS can be a simple and convenient alternative to plasma or serum for HBsAg detection, but site-specific validation of the assay is necessary for anti-HCV detection.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Article Infectious Diseases

Evaluation of the Performance of the Dynamiker Fungus (1-3)-β-D-Glucan and Fungitell Assay for Diagnosis of Candidemia: Need for New Cut-off Development and Test Validation

Somayeh Yazdanpanah, Maryam Rahbarmah, Marjan Motamedi, Hossein Khodadadi

Summary: This study compared the clinical characteristics of Fungitell and Dynamiker Fungus assays for diagnosing candidemia. The results showed that the DFA assay performed excellently, with high consistency with the FA assay and superior diagnostic performance.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Article Infectious Diseases

Preparing for laboratory automation and consolidation-Establishing the validity of pediatric-like low-volume urine samples in boric-acid containing tubes

Or Kriger, Natasha Belausov, Shiraz Gefen-Halevi, Nadezda Savieva, Sharon Amit

Summary: This study demonstrates that the usage of preservative-containing urine tubes may inhibit pathogens in low-volume pediatric urine samples, resulting in false-negative results. We advocate for large-scale validations by regulators to ensure result consistency.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Article Infectious Diseases

Evaluation of antibody and T Cell immunity response in different immunization groups of inactive and mRNA COVID-19 vaccines

Merve Zerey Albayrak, Sureyya Gul Yurtsever, Bilal Olcay Peker, Tuba Muderris, Selcuk Kaya

Summary: This study evaluated the antibody and T cell responses of homologous and heterologous booster doses for SARS-CoV-2 vaccines. The results showed that individuals who received heterologous boosters had higher antibody levels and higher levels of IFN-gamma, IL-2, and IL-13.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Article Infectious Diseases

Quality of the sample-based RNA determines the real-time RT-PCR results in the laboratory diagnosis of COVID-19

Sibra R. M. Shihab, Bushran N. Iqbal, Shiyamalee Arunasalam, Faseeha Noordeen

Summary: This study investigated the effect of sample-based RNA quality on COVID-19 real-time RT-PCR results. The purity of the extracts and concentration of RNA were found to impact test interpretations. The presence of impurities led to inconclusive test results.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Article Infectious Diseases

Evaluation of two automated real-time PCR-based quantification methods for whole blood Epstein-Barr viral load

Ellen Vancutsem, Florence Crombe, Oriane Soetens, Magali Wautier, Corinna Dordelmann, Denis Pierard, Ingrid Wybo, Thomas Demuyser

Summary: Quantification of EBV DNA is crucial in transplantation settings for post-transplantation diagnosis. This study evaluated the performance of the AltoStar (R) EBV PCR Kit 1.5 on whole blood samples and found it to be reliable and accurate, with good sensitivity and linear range for EBV viral load determination.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Article Infectious Diseases

Using a commercially available assay that measures cytomegalovirus (CMV)-specific T-cell immunity to predict protection against CMV: A prospective, blinded clinical study

Nouf K. Almaghlouth, Panagiotis Arvanitis, Kendra Vieira, Abby London, Dimitrios Farmakiotis

Summary: This study evaluated the performance of the Viracor CMV-T-cell immunity Panel (TCIP) in predicting CMV events. The results showed that CMV-specific CD4+ and CD8(+)T-cells were significantly lower in those with CMV events, and the TCIP could be a useful adjunct tool in individualized management of CMV infection.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Article Infectious Diseases

The pathology biopsy represents the gold standard for diagnosis: a case report

Linzhen Zhu, Haoting Zhang, Haibo Gu, Jianying Zhou

Summary: This case report describes a 70-year-old male patient with previously unknown immunodeficiency. Multiple pulmonary nodular shadows were observed on radiography. Fungal infection was detected in various samples, and the patient was ultimately diagnosed with disseminated Talaromyces marneffei infection and B-cell non-Hodgkin's lymphoma. The main significance of this study is to emphasize the importance for clinicians to obtain comprehensive specimens from patients presenting with multiple masses in order to ensure accurate clinical diagnosis.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Article Infectious Diseases

Molecular detection of pre-ribosomal RNAs of Mycobacterium bovis bacille Calmette-Guerin and Mycobacterium tuberculosis to enhance pre-clinical tuberculosis drug and vaccine development

Ming Chang, Sambasivan Venkatasubramanian, Holly Barrett, Kevin B. Urdahl, Kris M. Weigel, Gerard A. Cangelosi, Javeed A. Shah, Aparajita Saha, Libing Feng, Kristin N. Adams, David R. Sherman, Nahum Smith, Chetan Seshadri, Sean C. Murphy, James G. Kublin

Summary: Efforts are being made globally to develop vaccines and drugs against M. tuberculosis. This study developed a real-time RT-PCR assay to detect pre-rRNA as a biomarker for bacterial viability. The assay showed promising results in mouse models, indicating its potential in future clinical studies for tuberculosis drugs and vaccines.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Letter Infectious Diseases

Lemierre's syndrome: varying pathogens, clinical presentations and complications

Temi Lampejo, Fadia Alsheikh, Declan Crilly, Martin Brown

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Review Infectious Diseases

A pulmonary abscess caused by Porphyromonas endodontalis infection:A case report and literature review

Yao Li, Pengfei Shi, Rong Zhu

Summary: This study successfully diagnosed a case of lung abscess caused by Porphyromonas endodontalis using mNGS technology, highlighting the importance of considering inhalation diseases caused by oral pathogens in patients with periodontal diseases and respiratory symptoms.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Article Infectious Diseases

2,3,5-triphenyl tetrazolium chloride as colorimetric indicator for drug susceptibility testing against nontuberculous mycobacteria

Mariana Quaresma de Souza, Dienefer Venske Bierhals, Ana Julia Reis, Erica Chimara, Julia Silveira Vianna, Andrea von Groll, Pedro Almeida da Silva, Ivy Bastos Ramis

Summary: This study proposed and evaluated a drug susceptibility testing method using 2,3,5-triphenyl tetrazolium chloride (TTC) as a colorimetric indicator for the clinical relevant non-tuberculous mycobacteria (Mycobacterium abscessus complex (MABC), M. avium complex (MAC), and M. kansasii). The results showed high agreement between TTC assay and the recommended broth microdilution method, indicating the potential of TTC as a promising indicator in drug susceptibility testing for NTM.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Review Infectious Diseases

Current status of recombinase polymerase amplification technologies for the detection of pathogenic microorganisms

Shanshan Zhang, Mingyuan Duan, Shuang Li, Jie Hou, Ting Qin, Zhanwei Teng, Jianhe Hu, Huihui Zhang, Xiaojing Xia

Summary: Rapid detection of pathogenic microorganisms is crucial for epidemiologic identification, prevention, and control in public health. PCR-based methods have limitations in resource-limited areas due to the need for precise temperature control. Recombinase polymerase amplification (RPA) is a new nucleic acid amplification technology that can amplify DNA or RNA at a constant temperature, offering simplicity, high specificity and sensitivity, and short detection time. Microfluidic technology combined with RPA enables rapid detection of pathogenic microorganisms by integrating nucleic acid extraction, amplification, and detection.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)

Review Infectious Diseases

microRNA as biomarkers in tuberculosis: a new emerging molecular diagnostic solution

Piyush Agrawal, Aditya Upadhyay, Awanish Kumar

Summary: Tuberculosis is a lethal infectious disease caused by Mycobacterium tuberculosis. During infection, the expression of host microRNAs changes, which could be potential biomarkers for early detection of tuberculosis. Further research is needed to identify potential microRNA biomarkers, but momentum is gaining in this field and microRNAs are expected to become routine approaches for reliable diagnosis and specific therapeutic interventions.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2024)