Codon Usage Methods for Horizontal Gene Transfer Detection Generate an Abundance of False Positive and False Negative Results

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

(2011) O. Popa et al.   GENOME RESEARCH

Association between translation efficiency and horizontal gene transfer within microbial communities

(2011) Tamir Tuller et al.   NUCLEIC ACIDS RESEARCH

Characterizing the Native Codon Usages of a Genome: An Axis Projection Approach

(2010) J. J. Davis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

GenBank

(2010) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Prokaryotic evolution and the tree of life are two different things

(2009) Eric Bapteste et al.   Biology Direct

Modal Codon Usage: Assessing the Typical Codon Usage of a Genome

(2009) J. J. Davis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL

Taxonomy of oxalotrophic Methylobacterium strains

(2008) Nurettin Sahin et al.   NATURWISSENSCHAFTEN

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

(2008) T. Dagan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA