Effects of species biology on the historical demography of sharks and their implications for likely consequences of contemporary climate change

Limits of Bayesian skyline plot analysis of mtDNA sequences to infer historical demographies in Pacific herring (and other species)

(2012) W. Stewart Grant et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeography of the reef fish Cephalopholis argus(Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle

(2011) Michelle R Gaither et al.   BMC EVOLUTIONARY BIOLOGY

Quaternary phylogeography: the roots of hybrid zones

(2011) Godfrey M. Hewitt   GENETICA

Phylogeography of the copper shark (Carcharhinus brachyurus) in the southern hemisphere: implications for the conservation of a coastal apex predator

(2011) Martin T. Benavides et al.   MARINE AND FRESHWATER RESEARCH

Expansion Dating: Calibrating Molecular Clocks in Marine Species from Expansions onto the Sunda Shelf Following the Last Glacial Maximum

(2011) E. D. Crandall et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effects of Pleistocene climatic fluctuations on the phylogeographic and demographic histories of Pacific herring (Clupea pallasii)

(2011) JIN-XIAN LIU et al.   MOLECULAR ECOLOGY

The performance of phylogenetic algorithms in estimating haplotype genealogies with migration

(2011) WALTER SALZBURGER et al.   MOLECULAR ECOLOGY

Time-dependent rates of molecular evolution

(2011) SIMON Y. W. HO et al.   MOLECULAR ECOLOGY

Detecting signatures of positive selection in partial sequences generated on a large scale: pitfalls, procedures and resources

(2011) MARINE S. O. BRIEUC et al.   Molecular Ecology Resources

Demographic Processes Underlying Subtle Patterns of Population Structure in the Scalloped Hammerhead Shark, Sphyrna lewini

(2011) Holly A. Nance et al.   PLoS One

Positive Darwinian Selection in the Piston That Powers Proton Pumps in Complex I of the Mitochondria of Pacific Salmon

(2011) Michael R. Garvin et al.   PLoS One

Relatedness and polyandry of sixgill sharks, Hexanchus griseus, in an urban estuary

(2010) Shawn Larson et al.   CONSERVATION GENETICS

Phylogeography and conservation of the bull shark (Carcharhinus leucas) inferred from mitochondrial and microsatellite DNA

(2010) S. A. Karl et al.   CONSERVATION GENETICS

Thermal energy and the rate of genetic evolution in marine fishes

(2010) Shane D. Wright et al.   EVOLUTIONARY ECOLOGY

Long-term shifts in abundance and distribution of a temperate fish fauna: a response to climate change and fishing practices

(2010) Peter R. Last et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Origins, ages and population histories: comparative phylogeography of endemic Hawaiian butterflyfishes (genus Chaetodon)

(2010) Matthew T. Craig et al.   JOURNAL OF BIOGEOGRAPHY

Multiple ice-age refugia in Pacific cod, Gadus macrocephalus

(2010) MICHAEL F. CANINO et al.   MOLECULAR ECOLOGY

Global population structure of the spiny dogfishSqualus acanthias, a temperate shark with an antitropical distribution

(2010) A. VERÍSSIMO et al.   MOLECULAR ECOLOGY

World phylogeography and male-mediated gene flow in the sandbar shark, Carcharhinus plumbeus

(2010) DAVID S. PORTNOY et al.   MOLECULAR ECOLOGY

Positive relationships between genetic diversity and abundance in fishes

(2010) MEGAN R. MCCUSKER et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Seasonal and Ontogenetic Changes in Movement Patterns of Sixgill Sharks

(2010) Kelly S. Andrews et al.   PLoS One

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tropical Ocean Temperatures Over the Past 3.5 Million Years

(2010) T. D. Herbert et al.   SCIENCE

Watching the clock: Studying variation in rates of molecular evolution between species

(2010) Robert Lanfear et al.   TRENDS IN ECOLOGY & EVOLUTION

A framework for community interactions under climate change

(2010) Sarah E. Gilman et al.   TRENDS IN ECOLOGY & EVOLUTION

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals

(2009) Benoit Nabholz et al.   BMC EVOLUTIONARY BIOLOGY

DISENTANGLING THE EFFECTS OF EVOLUTIONARY, DEMOGRAPHIC, AND ENVIRONMENTAL FACTORS INFLUENCING GENETIC STRUCTURE OF NATURAL POPULATIONS: ATLANTIC HERRING AS A CASE STUDY

(2009) Oscar E. Gaggiotti et al.   EVOLUTION

How does fishing alter marine populations and ecosystems sensitivity to climate?

(2009) Benjamin Planque et al.   JOURNAL OF MARINE SYSTEMS

Global population structure of the tope (Galeorhinus galeus) inferred by mitochondrial control region sequence data

(2009) C. L. CHABOT et al.   MOLECULAR ECOLOGY

Nuclear and mitochondrial DNA reveals isolation of imperilled grey nurse shark populations (Carcharias taurus)

(2009) H. AHONEN et al.   MOLECULAR ECOLOGY

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

(2009) N. GALTIER et al.   MOLECULAR ECOLOGY

The ‘Expansion-Contraction’ model of Pleistocene biogeography: rocky shores suffer a sea change?

(2009) PETER B. MARKO et al.   MOLECULAR ECOLOGY

Philopatry and migration of Pacific white sharks

(2009) S. J. Jorgensen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Refugia revisited: individualistic responses of species in space and time

(2009) J. R. Stewart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Last Glacial Maximum

(2009) P. U. Clark et al.   SCIENCE

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

EVALUATING SIGNATURES OF GLACIAL REFUGIA FOR NORTH ATLANTIC BENTHIC MARINE TAXA

(2008) Christine A. Maggs et al.   ECOLOGY

Information from a pregnant salmon sharkLamna ditropisin the eastern North Pacific with observations on oophagous reproduction

(2008) V. F. Gallucci et al.   JOURNAL OF FISH BIOLOGY

Migration of an upper trophic level predator, the salmon shark Lamna ditropis, between distant ecoregions

(2008) KC Weng et al.   MARINE ECOLOGY PROGRESS SERIES

Geological Dates and Molecular Rates: Fish DNA Sheds Light on Time Dependency

(2008) C. P. Burridge et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Global phylogeography and seascape genetics of the lemon sharks (genusNegaprion)

(2008) J. K. SCHULTZ et al.   MOLECULAR ECOLOGY

The Effect of Inappropriate Calibration: Three Case Studies in Molecular Ecology

(2008) Simon Y. W. Ho et al.   PLoS One