GPU-UPGMA: high-performance computing for UPGMA algorithm based on graphics processing units

GPU-Based Cloud Service for Smith-Waterman Algorithm Using Frequency Distance Filtration Scheme

(2013) Sheng-Ta Lee et al.   Biomed Research International

CUDA-BLASTP: Accelerating BLASTP on CUDA-Enabled Graphics Hardware

(2011) Weiguo Liu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Acceleration of the Smith–Waterman algorithm using single and multiple graphics processors

(2010) Ali Khajeh-Saeed et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Efficient parallel branch-and-bound algorithm for constructing minimum ultrametric trees

(2009) Kun-Ming Yu et al.   JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING

CUDA–MEME: Accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units

(2009) Yongchao Liu et al.   PATTERN RECOGNITION LETTERS

CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

(2008) Svetlin A Manavski et al.   BMC BIOINFORMATICS