4.5 Review

Genome-wide association studies in the hunt for genes causing primary open-angle glaucoma: a review

期刊

CLINICAL AND EXPERIMENTAL OPHTHALMOLOGY
卷 40, 期 4, 页码 358-363

出版社

WILEY
DOI: 10.1111/j.1442-9071.2011.02744.x

关键词

endophenotype; genetics; primary open-angle glaucoma; quantitative trait loci

资金

  1. National Health and Medical Research Council

向作者/读者索取更多资源

Genome-wide association studies are a powerful tool for the identification of genetic risk factors for complex disease. This methodology has been successfully applied to primary open-angle glaucoma through the analysis of primary open-angle glaucoma (POAG) as well as specific subgroups of patients including those with normal tension glaucoma and advanced glaucoma. In addition, the analysis of quantitative traits important in POAG, including optic disc area and vertical cup-to-disc ratio has also identified genes important in POAG development. This review explores findings of genome-wide association studies for POAG and related traits.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.5
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Biochemical Research Methods

Rapid and efficient cataract gene evaluation in F0 zebrafish using CRISPR-Cas9 ribonucleoprotein complexes

Duran Zhao, Johanna L. Jones, Robert J. Gasperini, Jac C. Charlesworth, Guei-Sheung Liu, Kathryn P. Burdon

Summary: Identification of genes causing cataract is crucial for understanding the pathology of inherited pediatric cataract and developing new therapies. This study presents a step-by-step pipeline to evaluate cataract candidate genes in zebrafish using CRISPR-Cas9, offering a simple and efficient method for assessment in basic laboratory settings.

METHODS (2021)

Article Multidisciplinary Sciences

Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries

Puya Gharahkhani, Eric Jorgenson, Pirro Hysi, Anthony P. Khawaja, Sarah Pendergrass, Xikun Han, Jue Sheng Ong, Alex W. Hewitt, Ayellet Segre, John M. Rouhana, Andrew R. Hamel, Robert P. Igo, Helene Choquet, Ayub Qassim, Navya S. Josyula, Jessica N. Cooke Bailey, Pieter W. M. Bonnemaijer, Adriana Iglesias, Owen M. Siggs, Terri L. Young, Veronique Vitart, Alberta A. H. J. Thiadens, Juha Karjalainen, Steffen Uebe, Ronald B. Melles, K. Saidas Nair, Robert Luben, Mark Simcoe, Nishani Amersinghe, Angela J. Cree, Rene Hohn, Alicia Poplawski, Li Jia Chen, Shi-Song Rong, Tin Aung, Eranga Nishanthie Vithana, Gen Tamiya, Yukihiro Shiga, Masayuki Yamamoto, Toru Nakazawa, Hannah Currant, Ewan Birney, Xin Wang, Adam Auton, Michelle K. Lupton, Nicholas G. Martin, Adeyinka Ashaye, Olusola Olawoye, Susan E. Williams, Stephen Akafo, Michele Ramsay, Kazuki Hashimoto, Yoichiro Kamatani, Masato Akiyama, Yukihide Momozawa, Paul J. Foster, Peng T. Khaw, James E. Morgan, Nicholas G. Strouthidis, Peter Kraft, Jae H. Kang, Chi Pui Pang, Francesca Pasutto, Paul Mitchell, Andrew J. Lotery, Aarno Palotie, Cornelia van Duijn, Jonathan L. Haines, Chris Hammond, Louis R. Pasquale, Caroline C. W. Klaver, Michael Hauser, Chiea Chuen Khor, David A. Mackey, Michiaki Kubo, Ching-Yu Cheng, Jamie E. Craig, Stuart MacGregor, Janey L. Wiggs

Summary: The authors conducted a meta-analysis of genome-wide association studies in 34,179 cases of POAG, identifying 44 previously unreported risk loci and mapping effects across multiple ethnicities. Integration of multiple lines of genetic evidence supports the functional relevance of the identified POAG risk loci.

NATURE COMMUNICATIONS (2021)

Article Ophthalmology

Gene Set Enrichment Analsyes Identiify Pathways Involved in Genetic Risk for Diabetic Retinopathy

Lucia Sobrin, Gayatri Susarla, Lynn Stanwyck, John M. Rouhana, Ashley Li, Samuela Pollack, Robert P. Igo, Richard A. Jensen, Xiaohui Li, Maggie C. Y. Ng, Albert Smith, Jane Z. Kuo, Kent D. Taylor, Barry Freedman, Donald W. Bowden, Alan Penman, Ching J. Chen, Jamie E. Craig, Sharon G. Adler, Emily Y. Chew, Mary Frances Cotch, Brian Yaspan, Paul Mitchell, Jie Jin Wang, Barbara E. K. Klein, Tien Y. Wong, Jerome Rotter, Kathyrn P. Burdon, Sudha K. Iyengar, Ayellet Segre

Summary: This study identified functionally related genes associated with diabetic retinopathy risk using gene set enrichment analyses in genome-wide association study meta-analyses. The variants in genes involved in oxidative stress, lipid transport and catabolism, and cell degeneration were found to be enriched for genes associated with DR risk.

AMERICAN JOURNAL OF OPHTHALMOLOGY (2022)

Correction Ophthalmology

GENE SET ENRICHMENT ANALYSES IDENTIFY PATHWAYS INVOLVED IN GENETIC RISK FOR DIABETIC RETINOPATHY (Vol 233, pg 111, 2022)

Lucia Sobrin, Gayatri Susarla, Lynn Stanwyck, John M. Rouhana, Ashley Li, Samuela Pollack, Robert P. Igo, Richard A. Jensen, Xiaohui Li, Maggie C. Y. Ng, Albert V. Smith, Jane Z. Kuo, Kent D. Taylor, Barry I. Freedman, Donald W. Bowden, Alan Penman, Ching J. Chen, Jamie E. Craig, Sharon G. Adler, Emily Y. Chew, Mary Frances Cotch, Brian Yaspan, Paul Mitchell, Jie Jin Wang, Barbara E. K. Klein, Tien Y. Wong, Jerome I. Rotter, Kathryn P. Burdon, Sudha K. Iyengar, Ayellet V. Serge

AMERICAN JOURNAL OF OPHTHALMOLOGY (2022)

Article Biochemistry & Molecular Biology

Identifying Genetic Biomarkers Predicting Response to Anti-Vascular Endothelial Growth Factor Injections in Diabetic Macular Edema

Rajya L. Gurung, Liesel M. FitzGerald, Ebony Liu, Bennet J. McComish, Georgia Kaidonis, Bronwyn Ridge, Alex W. Hewitt, Brendan J. Vote, Nitin Verma, Jamie E. Craig, Kathryn P. Burdon

Summary: This study identified genetic determinants associated with anti-VEGF treatment response in patients with DME through a genome-wide association study. Multiple genetic loci were found to predict treatment outcomes, potentially leading to personalized treatment approaches for managing DME.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Article Ophthalmology

The effect of insulin on response to intravitreal anti-VEGF injection in diabetic macular edema in type 2 diabetes mellitus

Rajya L. Gurung, Liesel M. FitzGerald, Ebony Liu, Bennet J. McComish, Georgia Kaidonis, Bronwyn Ridge, Alex W. Hewitt, Brendan Jt Vote, Nitin Verma, Jamie E. Craig, Kathryn P. Burdon

Summary: The study found that insulin therapy does not affect the effectiveness of anti-VEGF injection treatment for diabetic macular edema.

BMC OPHTHALMOLOGY (2022)

Article Ophthalmology

Association of Novel Loci With Keratoconus Susceptibility in a Multitrait Genome-Wide Association Study of the UK Biobank Database and Canadian Longitudinal Study on Aging

Weixiong He, Xikun Han, Jue-Sheng Ong, Alex W. Hewitt, David A. Mackey, Puya Gharahkhani, Stuart MacGregor

Summary: By utilizing a relatively large dataset, this study identified novel risk loci for keratoconus and enhanced the polygenic risk score models, improving predictions of keratoconus risk.

JAMA OPHTHALMOLOGY (2022)

Review Genetics & Heredity

Integrating Genetic Structural Variations and Whole-Genome Sequencing Into Clinical Neurology

Xin Lin, Yuanhao Yang, Phillip E. Melton, Vikrant Singh, Steve Simpson-Yap, Kathryn P. Burdon, Bruce Taylor, Yuan Zhou

Summary: Advancements in genome sequencing technologies have opened up new possibilities in understanding neurologic diseases and improving diagnostic and management strategies. Whole-genome sequencing (WGS) is a valuable tool in discovering structural variants and improving genetic tests in clinical settings. Ongoing research in structural variations and mutational constraints can contribute to improved variant interpretation and therapeutic development.

NEUROLOGY-GENETICS (2022)

Article Genetics & Heredity

Specifications of the ACMG/AMP variant curation guidelines for myocilin: Recommendations from the clingen glaucoma expert panel

Kathryn P. Burdon, Patricia Graham, Johanna Hadler, John D. Hulleman, Francesca Pasutto, Erin A. Boese, Jamie E. Craig, John H. Fingert, Alex W. Hewitt, Owen M. Siggs, Kristina Whisenhunt, Terri L. Young, David A. Mackey, Andrew Dubowsky, Emmanuelle Souzeau

Summary: Standardization of variant curation criteria is crucial for accurate interpretation of genetic results and clinical care. This study developed gene-specific variant curation guidelines for myocilin (MYOC) and piloted them on 81 variants, resulting in a change in classification for 40% of the variants in ClinVar. Functional evidence played a role in the reclassification of 18 variants. These guidelines provide a framework for consistent application of rules in laboratories to improve MYOC genetic testing in the management of glaucoma.

HUMAN MUTATION (2022)

Article Genetics & Heredity

Diagnostic yield of candidate genes in an Australian corneal dystrophy cohort

Emmanuelle Souzeau, Owen M. Siggs, Sean Mullany, Joshua M. Schmidt, Mark M. Hassall, Andrew Dubowsky, Angela Chappell, James Breen, Haae Bae, Jillian Nicholl, Johanna Hadler, Lisa S. Kearns, Sandra E. Staffieri, Alex W. Hewitt, David A. Mackey, Aanchal Gupta, Kathryn P. Burdon, Sonja Klebe, Jamie E. Craig, Richard A. Mills

Summary: This study investigated the diagnostic yield of genetic testing in a specific group of individuals with corneal dystrophy and found that a likely molecular diagnosis was identified in 70.5% of families. The detection rate was higher among individuals with a family history of corneal dystrophy and those who had undergone corneal graft surgery. The study highlights the importance of genetic testing in reaching an accurate diagnosis for corneal dystrophies.

MOLECULAR GENETICS & GENOMIC MEDICINE (2022)

Article Ophthalmology

Pathogenic genetic variants identified in Australian families with paediatric cataract

Johanna L. Jones, Bennet J. McComish, Sandra E. Staffieri, Emmanuelle Souzeau, Lisa S. Kearns, James E. Elder, Jac C. Charlesworth, David A. Mackey, Jonathan B. Ruddle, Deepa Taranath, John Pater, Theresa Casey, Jamie E. Craig, Kathryn P. Burdon

Summary: This study identified potential disease-causing variants for paediatric cataract through gene screening, expanding our understanding of the genotype-phenotype correlations in cataract-associated genes.

BMJ OPEN OPHTHALMOLOGY (2022)

Article Clinical Neurology

Novel plasma and brain proteins that are implicated in multiple sclerosis

Xin Lin, Yuanhao Yang, Melissa Gresle, Gabriel Cuellar-Partida, Xikun Han, Jim Stankovich, Steve Simpson-Yap, Valery Fuh-Ngwa, Jac Charlesworth, Kathryn P. Burdon, Helmut Butzkueven, Bruce Taylor, Yuan Zhou

Summary: This study identifies 39 novel plasma and brain proteins associated with multiple sclerosis onset risk and assesses their expression at tissue and cell level. Almost two-thirds of the identified candidates were also associated with disability progression.
Article Biology

Rare variant analyses across multiethnic cohorts identify novel genes for refractive error

Anthony M. Musolf, Annechien E. G. Haarman, Robert N. Luben, Jue-Sheng Ong, Karina Patasova, Rolando Hernandez Trapero, Joseph Marsh, Ishika Jain, Riya Jain, Paul Zhiping Wang, Deyana D. Lewis, Milly S. Tedja, Adriana I. Iglesias, Hengtong Li, Cameron S. Cowan, Ginevra Biino, Alison P. Klein, Priya Duggal, David A. Mackey, Caroline Hayward, Toomas Haller, Andres Metspalu, Juho Wedenoja, Olavi Parssinen, Ching-Yu Cheng, Seang-Mei Saw, Dwight Stambolian, Pirro G. Hysi, Anthony P. Khawaja, Veronique Vitart, Christopher J. Hammond, Cornelia M. van Duijn, Virginie J. M. Verhoeven, Caroline C. W. Klaver, Joan E. Bailey-Wilson

Summary: Refractive error is a complex eye condition caused by genetic and environmental factors. Genome-wide association studies have identified common genetic risk factors, but a significant portion of the heritability is still unexplained. By conducting gene-based association tests, we identified 129 unique genes associated with refractive error in a large dataset. Some of the novel candidates, such as PDCD6IP, PER3, and P4HTM, show promise for future functional studies and validation.

COMMUNICATIONS BIOLOGY (2023)

Review Ophthalmology

Evaluating gap junction variants for a role in pediatric cataract: an overview of the genetic landscape and clinical classification of variants in the GJA3 and GJA8 genes

Johanna L. Jones, Kathryn P. Burdon

Summary: Variants in the GJA3 and GJA8 genes are common causes of inherited pediatric cataract, accounting for up to 18% of cases. However, many of these variants lack sufficient evidence of pathogenicity, highlighting the need for standardized functional data to evaluate their specific effects on protein function.

EXPERT REVIEW OF OPHTHALMOLOGY (2023)

Article Ophthalmology

The Association of Alcohol Consumption with Glaucoma and Related Traits Findings from the UK Biobank

Kelsey V. Stuart, Robert N. Luben, Alasdair N. Warwick, Kian M. Madjedi, Praveen J. Patel, Mahantesh I. Biradar, Zihan Sun, Mark A. Chia, Louis R. Pasquale, Janey L. Wiggs, Jae H. Kang, Jihye Kim, Hugues Aschard, Jessica H. Tran, Marleen A. H. Lentjes, Paul J. Foster, Anthony P. Khawaja

Summary: The purpose of this study was to examine the associations between alcohol consumption and glaucoma and related traits, assess whether genetic predisposition to glaucoma modified these associations, and perform MR experiments to investigate causal effects. The findings showed consistent and adverse associations between alcohol intake and glaucoma and related traits, even at levels below the current guidelines in the UK and the US.

OPHTHALMOLOGY GLAUCOMA (2023)

暂无数据