Computer science and parsimony: a reappraisal, with discussion of methods for poorly structured datasets

Local search for the generalized tree alignment problem

(2013) Andrés Varón et al.   BMC BIOINFORMATICS

Oblong, a program to analyse phylogenomic data sets with millions of characters, requiring negligible amounts of RAM

(2013) Pablo A. Goloboff   CLADISTICS

PTree: pattern-based, stochastic search for maximum parsimony phylogenies

(2013) Ivan Gregor et al.   PeerJ

Faster exact maximum parsimony search with XMP

(2011) W. Timothy J. White et al.   BIOINFORMATICS

Adaptive memory programming: local search parallel algorithms for phylogenetic tree construction

(2010) Jacek Blazewicz et al.   ANNALS OF OPERATIONS RESEARCH

POY version 4: phylogenetic analysis using dynamic homologies

(2009) Andrés Varón et al.   CLADISTICS

A hybrid genetic algorithm for the phylogeny problem using path-relinking as a progressive crossover strategy

(2009) Celso C. Ribeiro et al.   International Transactions in Operational Research

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS