An analysis and prediction of nucleosome positioning based on information content

A Structural Perspective on the Where, How, Why, and What of Nucleosome Positioning

(2012) Gaurav Arya et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Nucleosome Positioning Pattern Derived from Oligonucleotide Compositions of Genomic Sequences

(2012) Alexandra E. Rapoport et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Phylogenomic reconstruction of lactic acid bacteria: an update

(2011) Zhi-Gang Zhang et al.   BMC EVOLUTIONARY BIOLOGY

Prediction of nucleosome occupancy in Saccharomyces cerevisiae using position-correlation scoring function

(2011) Yongqiang Xing et al.   GENOMICS

FlyBase 101 - the basics of navigating FlyBase

(2011) P. McQuilton et al.   NUCLEIC ACIDS RESEARCH

The UCSC Genome Browser database: extensions and updates 2011

(2011) T. R. Dreszer et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Effects of Alu elements on global nucleosome positioning in the human genome

(2010) Yoshiaki Tanaka et al.   BMC GENOMICS

Relationship between nucleosome positioning and DNA methylation

(2010) Ramakrishna K. Chodavarapu et al.   NATURE

Nucleosome sequence preferences influence in vivo nucleosome organization

(2010) Noam Kaplan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Oligonucleotide Sequence Motifs as Nucleosome Positioning Signals

(2010) Clayton K. Collings et al.   PLoS One

Learning a Weighted Sequence Model of the Nucleosome Core and Linker Yields More Accurate Predictions in Saccharomyces cerevisiae and Homo sapiens

(2010) Sheila M. Reynolds et al.   PLoS Computational Biology

G+C content dominates intrinsic nucleosome occupancy

(2009) Desiree Tillo et al.   BMC BIOINFORMATICS

Base pair stacking in nucleosome DNA and bendability sequence pattern

(2009) Edward N. Trifonov   JOURNAL OF THEORETICAL BIOLOGY

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

(2009) Yong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

CpG_MI: a novel approach for identifying functional CpG islands in mammalian genomes

(2009) Jianzhong Su et al.   NUCLEIC ACIDS RESEARCH

Evaluation of time profile reconstruction from complex two-color microarray designs

(2008) Ana C Fierro et al.   BMC BIOINFORMATICS

Dynamic Regulation of Nucleosome Positioning in the Human Genome

(2008) Dustin E. Schones et al.   CELL

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

(2008) A. Valouev et al.   GENOME RESEARCH

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

(2008) T. N. Mavrich et al.   GENOME RESEARCH

Nucleosome organization in the Drosophila genome

(2008) Travis N. Mavrich et al.   NATURE

The DNA-encoded nucleosome organization of a eukaryotic genome

(2008) Noam Kaplan et al.   NATURE

Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion

(2008) Guo-Cheng Yuan et al.   PLoS Computational Biology

Predicting Human Nucleosome Occupancy from Primary Sequence

(2008) Shobhit Gupta et al.   PLoS Computational Biology

The Impact of the Nucleosome Code on Protein-Coding Sequence Evolution in Yeast

(2008) Tobias Warnecke et al.   PLoS Genetics