4.2 Article

Translocation of Polymer Chains Through a Channel with Complex Geometries

期刊

CHINESE JOURNAL OF CHEMICAL PHYSICS
卷 21, 期 6, 页码 555-559

出版社

CHINESE PHYSICAL SOC
DOI: 10.1088/1674-0068/21/06/555-559

关键词

Elastic behavior; nPERMis; Polymer translocation

资金

  1. National Natural Science Foundation of China [20574052, 20774066]
  2. Program for New Century Excellent Talents in University [NCET-05-0538]
  3. Natural Science Foundation of Zhejiang Province [R404047]

向作者/读者索取更多资源

The elastic behavior of a single chain transporting through complex channel which can be seen as the combination of three different channels (left channel, middle channel, and right channel, respectively) is investigated using the new pruned-enriched Rosenbluth method with importance sampling. The elastic force during the translocation process is calculated. At the entrance into the middle channel, there is the first plateau in the curve of the elastic force f (f>0) versus x, here x represents the position of the first monomer along the x-axis direction. When the first monomer moves to a. certain position, a second plateau is observed with the elastic force f<0, which represents spontaneous translocation. The free energy difference between the subchain in the right channel and the subchain in the left channel may drive the translocation. The influence of chain length and width of the left and right channels on the translocation process are also investigated. From the simulation results, more detailed explanations for the reason why the component translocation time is not the same for different channels can be presented.

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