4.4 Article

Mechanical-Statistical Modeling in Ecology: From Outbreak Detections to Pest Dynamics

期刊

BULLETIN OF MATHEMATICAL BIOLOGY
卷 71, 期 2, 页码 318-338

出版社

SPRINGER
DOI: 10.1007/s11538-008-9363-9

关键词

European pine sawfly; Bayesian inference; Hidden variable; Scale discrepancy; Spatio-temporal model; Two-regime assumption

向作者/读者索取更多资源

Knowledge about large-scale and long-term dynamics of (natural) populations is required to assess the efficiency of control strategies, the potential for long-term persistence, and the adaptability to global changes such as habitat fragmentation and global warming. For most natural populations, such as pest populations, large-scale and long-term surveys cannot be carried out at a high resolution. For instance, for population dynamics characterized by irregular abundance explosions, i.e., outbreaks, it is common to report detected outbreaks rather than measuring the population density at every location and time event. Here, we propose a mechanical-statistical model for analyzing such outbreak occurrence data and making inference about population dynamics. This spatio-temporal model contains the main mechanisms of the dynamics and describes the observation process. This construction enables us to account for the discrepancy between the phenomenon scale and the sampling scale. We propose the Bayesian method to estimate model parameters, pest densities and hidden factors, i.e., variables involved in the dynamics but not observed. The model was specified and used to learn about the dynamics of the European pine sawfly (Neodiprion sertifer Geoffr., an insect causing major defoliation of pines in northern Europe) based on Finnish sawfly data covering the years 1961-1990. In this application, a dynamical Beverton-Holt model including a hidden regime variable was incorporated into the model to deal with large variations in the population densities. Our results gave support to the idea that pine sawfly dynamics should be studied as metapopulations with alternative equilibria. The results confirmed the importance of extreme minimum winter temperatures for the occurrence of European pine sawfly outbreaks. The strong positive connection between the ratio of lake area over total area and outbreaks was quantified for the first time.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.4
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Public, Environmental & Occupational Health

A Spatio-Temporal Exposure-Hazard Model for Assessing Biological Risk and Impact

Emily Walker, Melen Leclerc, Jean-Francois Rey, Remy Beaudouin, Samuel Soubeyrand, Antoine Messean

RISK ANALYSIS (2019)

Article Multidisciplinary Sciences

Colony adaptive response to simulated heat waves and consequences at the individual level in honeybees (Apis mellifera)

Celia Bordier, Helene Dechatre, Severine Suchail, Mathilde Peruzzi, Samuel Soubeyrand, Maryline Pioz, Michel Pelissier, Didier Crauser, Yves Le Conte, Cedric Alaux

SCIENTIFIC REPORTS (2017)

Article Geosciences, Multidisciplinary

On parameter estimation for doubly inhomogeneous cluster point processes

Tomas Mrkvicka, Samuel Soubeyrand

SPATIAL STATISTICS (2017)

Article Plant Sciences

Inferring pathogen dynamics from temporal count data: the emergence of Xylella fastidiosa in France is probably not recent

Samuel Soubeyrand, Pauline de Jerphanion, Olivier Martin, Mathilde Saussac, Charles Manceau, Pascal Hendrikx, Christian Lannou

NEW PHYTOLOGIST (2018)

Article Environmental Sciences

Spatial exposure-hazard and landscape models for assessing the impact of GM crops on non-target organisms

Melen Leclerc, Emily Walkera, Antoine Messean, Samuel Soubeyrand

SCIENCE OF THE TOTAL ENVIRONMENT (2018)

Article Biochemical Research Methods

Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape

David R. J. Pleydell, Samuel Soubeyrand, Sylvie Dallot, Gerard Labonne, Joel Chadoeuf, Emmanuel Jacquot, Gael Thebaud

PLOS COMPUTATIONAL BIOLOGY (2018)

Article Multidisciplinary Sciences

Using sensitivity analysis to identify key factors for the propagation of a plant epidemic

Loup Rimbaud, Claude Bruchou, Sylvie Dallot, David R. J. Pleydell, Emmanuel Jacquot, Samuel Soubeyrand, Gael Thebaud

ROYAL SOCIETY OPEN SCIENCE (2018)

Article Biology

Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases

M. Alamil, J. Hughes, K. Berthier, C. Desbiez, G. Thebaud, S. Soubeyrand

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)

Article Biology

Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France

Lionel Roques, Etienne K. Klein, Julien Papaix, Antoine Sar, Samuel Soubeyrand

BIOLOGY-BASEL (2020)

Article Multidisciplinary Sciences

COVID-19 mortality dynamics: The future modelled as a (mixture of) past(s)

Samuel Soubeyrand, Melina Ribaud, Virgile Baudrot, Denis Allard, Denys Pommeret, Lionel Roques

PLOS ONE (2020)

Article Multidisciplinary Sciences

A parsimonious approach for spatial transmission and heterogeneity in the COVID-19 propagation

L. Roques, O. Bonnefon, V. Baudrot, S. Soubeyrand, H. Berestycki

ROYAL SOCIETY OPEN SCIENCE (2020)

Article Mathematics, Applied

Equilibrium and sensitivity analysis of a spatio-temporal host-vector epidemic model

Olivier Martin, Yasmil Fernandez-Diclo, Jerome Coville, Samuel Soubeyrand

Summary: This article introduces a spatially-explicit compartmental model adapted to pathosystems with fixed hosts and mobile vectors for disease dissemination. The behavior of the model is analyzed through theoretical and numerical studies, and the implications for disease surveillance and control over a medium-to-long temporal horizon are discussed.

NONLINEAR ANALYSIS-REAL WORLD APPLICATIONS (2021)

Article Mathematical & Computational Biology

Identifying potential significant factors impacting zero-inflated proportion data

Melina Ribaud, Edith Gabriel, Joseph Hughes, Samuel Soubeyrand

Summary: In this article, a permutation-based approach is proposed to identify factors significantly correlated with zero-inflated proportion data (ZIPD) which are dependent, continuous and bounded. A performance indicator is introduced to quantify the percentage of correlation explained by the subset of significant factors. The methodology is demonstrated on simulated data and two real data sets in epidemiology, dealing with Influenza transmission probabilities between horses and COVID-19 mortality dynamics in geographic entities.

STATISTICS IN MEDICINE (2023)

Article Plant Sciences

Testing Differences Between Pathogen Compositions with Small Samples and Sparse Data

Samuel Soubeyrand, Vincent Garreta, Caroline Monteil, Frederic Suffert, Henriette Goyeau, Julie Berder, Jacques Moinard, Elisabeth Fournier, Didier Tharreau, Cindy E. Morris, Ivan Sache

PHYTOPATHOLOGY (2017)

Article Ecology

When group dispersal and Allee effect shape metapopulation dynamics

Samuel Soubeyrand, Anna-Liisa Laine

ANNALES ZOOLOGICI FENNICI (2017)

暂无数据