4.7 Article

ALK gene amplification is associated with poor prognosis in colorectal carcinoma

期刊

BRITISH JOURNAL OF CANCER
卷 109, 期 10, 页码 2735-2743

出版社

NATURE PUBLISHING GROUP
DOI: 10.1038/bjc.2013.641

关键词

colorectal cancer; ALK mutation; ALK gene amplification; ALK expression; survival

类别

向作者/读者索取更多资源

Background: Recently, the anaplastic lymphoma kinase (ALK) has been found to be altered in several solid and haematological tumours. ALK gene copy number changes and mutations in colorectal cancers (CRCs) are not well characterised. We aimed to study the prevalence of ALK copy number changes, translocations, gene mutations and protein expression in 770 CRC patients, and correlate these findings with molecular and clinico-pathological data. Methods: ALK gene copy number variations and ALK expression were evaluated by fluorescence in situ hybridisation (FISH) and immunohistochemistry, respectively. Results: Translocations of the ALK gene were not observed; 3.4% (26 out of 756) of the CRC patients tested had an increase in ALK gene copy number either amplification or gain. Interestingly, increased ALK gene copy number alteration was associated with poor prognosis (P = 0.0135) and was an independent prognostic marker in multivariate Cox proportional hazards model. The study reveals a significant impact of ALK gene copy number alterations on the outcome of patients with CRC. Conclusion: The findings of our study highlight a potential role of targeting ALK in advanced CRCs by using ALK FISH and ALK IHC as a screening tool to detect ALK alterations. Based on these findings, a potential role of ALK inhibitor as a therapeutic agent in a subset of CRC merits further investigation.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Review Pathology

Molecular characterisation of pancreatic ductal adenocarcinoma with NTRK fusions and review of the literature

Michael J. Allen, Amy Zhang, Prashant Bavi, Jaesung C. Kim, Gun Ho Jang, Deirdre Kelly, Sheron Perera, Rob E. Denroche, Faiyaz Notta, Julie M. Wilson, Anna Dodd, Stephanie Ramotar, Shawn Hutchinson, Sandra E. Fischer, Robert C. Grant, Steven Gallinger, Jennifer J. Knox, Grainne M. O'Kane

Summary: This study investigated the prevalence and genomic characteristics of NTRK fusions in pancreatic ductal adenocarcinoma (PDAC). Among 400 patients, 3 patients were found to have NTRK fusions. NTRK fusions are rare in PDAC but detection is vital for emerging therapeutic options.

JOURNAL OF CLINICAL PATHOLOGY (2023)

Article Cell Biology

Signaling pathways governing glioma cancer stem cells behavior

Ava Nasrolahi, Shirin Azizidoost, Klaudia Radoszkiewicz, Sajad Najafi, Farhoodeh Ghaedrahmati, Omid Anbiyaee, Seyed Esmaeil Khoshnam, Maryam Farzaneh, Shahab Uddin

Summary: Glioma is a common malignant brain tumor that arises from glial tissue. Glioma cancer stem cells (GCSCs) have been identified as playing important roles in tumor initiation and metastasis. Targeting GCSCs and their associated signaling pathways, as well as non-coding RNAs, could be a novel strategy for glioma treatment. In this review, critical signaling pathways involved in GCSC tumorigenesis and invasiveness are summarized.

CELLULAR SIGNALLING (2023)

Review Chemistry, Multidisciplinary

Applications of polydopaminic nanomaterials in mucosal drug delivery

Takwa Bedhiafi, Sourour Idoudi, Areej Ali Alhams, Queenie Fernandes, Heba Iqbal, Renuka Basineni, Shahab Uddin, Said Dermime, Maysaloun Merhi, Nashiru Billa

Summary: Polydopamine (PDA) is a biopolymer with unique physicochemical properties and has various applications in drug delivery, biosensing, imaging, and cancer therapy. Recent research has discovered the potential of PDA as a coating material for mucosal drug delivery, but there is limited information on this application. This review presents the properties of PDA and its biomedical applications, with a focus on its role as a coating material for nanoparticulate carriers in mucosal drug delivery. The challenges and possibilities of translating this technology to clinical studies are also discussed.

JOURNAL OF CONTROLLED RELEASE (2023)

Review Pathology

An updated review of contribution of long noncoding RNA-NEAT1 to the progression of human cancers

Maryam Farzaneh, Tariq Masoodi, Farhoodeh Ghaedrahmati, Klaudia Radoszkiewicz, Amir Anbiyaiee, Mohadeseh Sheykhi-Sabzehpoush, Niloofar Khoshdel Rad, Shahab Uddin, Seyedeh Pardis Motiee Jooybari, Seyed Esmaeil Khoshnam, Shirin Azizidoost

Summary: Long non-coding RNAs (lncRNAs) play crucial roles in cancer tumorigenesis and progression. Recent studies have shown that nuclear paraspeckle assembly transcript 1 (NEAT1) as an lncRNA can regulate cell proliferation, migration, and EMT in tumor cells. NEAT1 regulates cancer cell behavior by targeting several miRNA/mRNA axes. Therefore, NEAT1 may serve as a potential biomarker for predicting and treating certain human cancers. In this review, we provide an overview of various NEAT1-related signaling pathways that are critical in cancer initiation and progression.

PATHOLOGY RESEARCH AND PRACTICE (2023)

Review Pathology

Role of circulating-tumor DNA in the early-stage non-small cell lung carcinoma as a predictive biomarker

Saqib Raza Khan, Matthias Scheffler, Salman Muhammad Soomar, Yasmin Abdul Rashid, Munira Moosajee, Aamir Ahmad, Afsheen Raza, Shahab Uddin

Summary: Lung cancer is a common solid malignancy, and tissue biopsy has been the standard method for diagnosing it. However, the advent of molecular profiling of tumors has led to the emergence of liquid biopsy as a less invasive alternative. Circulating tumor DNA, captured through circulating tumor cells, is found in the blood of lung cancer patients and has various clinical uses, including prognosis and treatment purposes. This review focuses on the current literature and clinical implications of circulating tumor DNA in non-small cell lung cancer.

PATHOLOGY RESEARCH AND PRACTICE (2023)

Review Medicine, Research & Experimental

Integrative toxicogenomics: Advancing precision medicine and toxicology through artificial intelligence and OMICs technology

Ajay Vikram Singh, Vaisali Chandrasekar, Namuna Paudel, Peter Laux, Andreas Luch, Donato Gemmati, Veronica Tisato, Kirti S. Prabhu, Shahab Uddin, Sarada Prasad Dakua

Summary: More information about genetic makeup, drug response, multi-omics response, and genomic response is now available, leading to personalized treatment. Non-animal testing and computational toxicogenomics are becoming integral parts of risk assessment. Artificial intelligence (AI) has the potential to analyze patient data, predict treatment outcomes, and expedite data processing in personalized medicine and toxicogenomics. This article explores the current trends, future perspectives, challenges, and limitations in personalized medicine, toxicogenomics, and AI.

BIOMEDICINE & PHARMACOTHERAPY (2023)

Review Pathology

Multiple myeloma and its rare paraneoplastic manifestations simmering under the surface

Sehrish Sarwar Baloch, Saqib Raza Khan, Muhammad Tariq, Abdul Wasio, Ayesha Arshad Ali, Mehwish Shahzadi, Munira Moosajee, Shaheena Anwar, Afsheen Raza, Shahab Uddin

Summary: Paraneoplastic syndromes are complex clinical manifestations caused by hormones, cytokines, peptides or antibodies produced by malignant cells in the underlying malignancy, affecting multiple organ systems. Multiple Myeloma (MM), accounting for 10-15% of hematological malignancies and 1-2% of all malignancies, is associated with atypical clinical and laboratory paraneoplastic manifestations. Understanding these manifestations is important for differential diagnosis in uncertain cases.

PATHOLOGY RESEARCH AND PRACTICE (2023)

Article Oncology

Epigenetic programing of cancer stemness by transcription factors-non-coding RNAs interactions

Reem Khaled M. E. Alsayed, Khalid Sultan A. M. Sheikhan, Majid Ali Alam, Jorg Buddenkotte, Martin Steinhoff, Shahab Uddin, Aamir Ahmad

Summary: Cancer 'stemness' is crucial for the existence and characteristics of cancer cells. Transcription factors such as NF-KB and STAT-3 play a significant role in cancer stemness and are potential targets for cancer therapy. The study of non-coding RNAs has revealed their interactions with these transcription factors, offering insights into the regulatory mechanisms of cancer stemness and potential therapeutic opportunities.

SEMINARS IN CANCER BIOLOGY (2023)

Review Cell & Tissue Engineering

Unveiling the Therapeutic Potential of Non-Coding RNAs in Stroke-Induced Tissue Regeneration

Arshi Waseem, Abdul Quaiyoom Khan, Mohsin Ali Khan, Rehan Khan, Shahab Uddin, Johannes Boltze, Syed Shadab Raza

Summary: Stroke is a leading cause of death and disability worldwide, but effective treatments are limited. Abnormal expression of various non-coding RNAs (ncRNAs) has been found after stroke, affecting processes such as neurogenesis, angiogenesis, apoptosis, and autophagy. Understanding the roles and mechanisms of ncRNAs holds promise for future stroke treatments, as they can modify the impact and progression of stroke on a molecular level. Exploring the functions and underlying mechanisms of ncRNAs after stroke may reveal new therapeutic targets and improve diagnostics for stroke.

STEM CELLS (2023)

Article Computer Science, Information Systems

Investigating the Use of Machine Learning Models to Understand the Drugs Permeability Across Placenta

Vaisali Chandrasekar, Mohammed Yusuf Ansari, Ajay Vikram Singh, Shahab Uddin, Kirthi S. Prabhu, Sagnika Dash, Souhaila Al Khodor, Annalisa Terranegra, Matteo Avella, Sarada Prasad Dakua

Summary: Due to limited drug testing options for pregnant women, the development of computational algorithms is vital in predicting drug behavior in the placental barrier as an alternative to animal testing. The ability of a molecule to cross the placental barrier and affect the fetus is crucial in determining its toxicological effects. Through analyzing publicly available datasets, this study explores different machine learning models, fingerprints, and toolkits to find the most suitable models. Neural network-based models show effective predictions of permeability. Among them, K-nearest neighbor (KNN), standard vector classifier (SVC), and Multi-layer perceptron (MLP) perform the best with prediction percentages of 82%, 86.4%, and 90.8% respectively. Comparison of different models reveals negative permeability predictions for drugs like Aliskiren, certain insulin secretagogues, and glucocorticoids.

IEEE ACCESS (2023)

Review Oncology

Potential roles of lncRNA-XIST/miRNAs/mRNAs in human cancer cells

Maryam Farzaneh, Ava Nasrolahi, Farhoodeh Ghaedrahmati, Tariq Masoodi, Sajad Najafi, Mohadeseh Sheykhi-Sabzehpoush, Mahrokh Abouali Gale Dari, Klaudia Radoszkiewicz, Shahab Uddin, Shirin Azizidoost, Seyed Esmaeil Khoshnam

Summary: Long non-coding RNAs (lncRNAs) are a type of non-coding RNA that do not code for proteins and contain more than 200 nucleotides. They can have both oncogenic and tumor-suppressive properties in tumorigenesis. XIST, a known lncRNA involved in X chromosome silencing in female cells, has been associated with an increased risk of various cancers. This review aims to summarize the emerging roles of XIST in human cancers.

CLINICAL & TRANSLATIONAL ONCOLOGY (2023)

Review Oncology

Multifaceted Pharmacological Potentials of Curcumin, Genistein, and Tanshinone IIA through Proteomic Approaches: An In-Depth Review

Farheen Badrealam Khan, Parul Singh, Yahya F. Jamous, Syed Azmal Ali, Abdullah, Shahab Uddin, Qamar Zia, Manoj Kumar Jena, Mohsina Khan, Mohammad Owais, Chih Yang Huang, Venkatesh Chanukuppa, Chrismawan Ardianto, Long Chiau Ming, Waqas Alam, Haroon Khan, Mohammad Akli Ayoub

Summary: This article reviews the use of proteomics to study the molecular details of phytochemicals such as curcumin, genistein, and tanshinone IIA. These phytochemicals have various pharmacological properties that are extensively studied to understand their mechanisms of action. Proteomics technology has proved to be a reliable approach to unravel the molecular intricacies of phytochemicals.

CANCERS (2023)

Article Cell Biology

Role of HMGB1 and its associated signaling pathways in human malignancies

Sourour Idoudi, Takwa Bedhiafi, Shona Pedersen, Mohamed Elahtem, Izzaldin Alremawi, Sabah Akhtar, Said Dermime, Maysaloun Merhi, Shahab Uddin

Summary: This review focuses on the role of HMGB1 in human malignancies and the signaling pathways associated with it. It also discusses the potential of HMGB1 as a target/biomarker for cancer therapy, as well as the therapeutic strategies used to target HMGB1.

CELLULAR SIGNALLING (2023)

Article Pharmacology & Pharmacy

Shrinking the battlefield in cancer therapy: Nanotechnology against cancer stem cells

Queenie Fernandes, Lubna Therachiyil, Abdul Q. Khan, Takwa Bedhiafi, Hesham M. Korashy, Ajaz A. Bhat, Shahab Uddin

Summary: Cancer is a major cause of death worldwide and current treatments have limited efficacy. Nanotechnology offers innovative solutions by leveraging the unique properties of nanomaterials, improving drug efficiency, reducing side effects, and targeting cancer stem cells. However, there are still challenges in obtaining clinical approval for nano-drugs.

EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES (2023)

Review Oncology

The role of LncRNA MCM3AP-AS1 in human cancer

Shirin Azizidoost, Farhoodeh Ghaedrahmati, Mohadeseh Sheykhi-Sabzehpoush, Shahab Uddin, Mehri Ghafourian, Abdolah Mousavi Salehi, Mona Keivan, Maryam Cheraghzadeh, Zahra Nazeri, Maryam Farzaneh, Seyed Esmaeil Khoshnam

Summary: MCM3AP-AS1, a long noncoding RNA, is implicated in the progression of several types of cancers by targeting various signaling pathways and microRNAs associated with cancer development.

CLINICAL & TRANSLATIONAL ONCOLOGY (2023)

暂无数据