Bacteriophage functional genomics and its role in bacterial pathogen detection

A bacteriophage endolysin-based electrochemical impedance biosensor for the rapid detection of Listeria cells

(2012) Mona Tolba et al.   ANALYST

Shiga Toxin-Producing Escherichia coli O104:H4: a New Challenge for Microbiology

(2012) Maite Muniesa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pacific biosciences sequencing technology for genotyping and variation discovery in human data

(2012) Mauricio O Carneiro et al.   BMC GENOMICS

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

Prophage Excision Activates Listeria Competence Genes that Promote Phagosomal Escape and Virulence

(2012) Lev Rabinovich et al.   CELL

Contribution of phage-derived genomic islands to the virulence of facultative bacterial pathogens

(2012) Ben Busby et al.   ENVIRONMENTAL MICROBIOLOGY

Bacteriophage endolysins as novel antimicrobials

(2012) Mathias Schmelcher et al.   Future Microbiology

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies

(2012) Sajia Akhter et al.   NUCLEIC ACIDS RESEARCH

Genomic Comparison of Escherichia coli O104:H4 Isolates from 2009 and 2011 Reveals Plasmid, and Prophage Heterogeneity, Including Shiga Toxin Encoding Phage stx2

(2012) Sanaa A. Ahmed et al.   PLoS One

Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism

(2012) D. Veesler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

What is needed for phage therapy to become a reality in Western medicine?

(2012) Harald Brüssow   VIROLOGY

Getting grants

(2012) Victoria McGovern   Virulence

Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins

(2012) Victor Seguritan et al.   PLoS Computational Biology

Biocontrol of Ralstonia solanacearum by Treatment with Lytic Bacteriophages

(2011) Akiko Fujiwara et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SPC-P1: a pathogenicity-associated prophage of Salmonella paratyphi C

(2011) Qing-Hua Zou et al.   BMC GENOMICS

Comparative genomics of four closely related Clostridium perfringens bacteriophages reveals variable evolution among core genes with therapeutic potential

(2011) Brian B Oakley et al.   BMC GENOMICS

A novel bacteriophage Tail-Associated Muralytic Enzyme (TAME) from Phage K and its development into a potent antistaphylococcal protein

(2011) Vivek Paul et al.   BMC MICROBIOLOGY

Application of a bacteriophage cocktail to reduce Salmonella Typhimurium U288 contamination on pig skin

(2011) Steven P.T. Hooton et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Biocontrol of Salmonella Typhimurium in RTE foods with the virulent bacteriophage FO1-E2

(2011) Susanne Guenther et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Campylobacter bacteriophages and bacteriophage therapy

(2011) P.L. Connerton et al.   JOURNAL OF APPLIED MICROBIOLOGY

Prophage-Stimulated Toxin Production in Clostridium difficile NAP1/027 Lysogens

(2011) O. Sekulovic et al.   JOURNAL OF BACTERIOLOGY

The Opening of the SPP1 Bacteriophage Tail, a Prevalent Mechanism in Gram-positive-infecting Siphophages

(2011) Adeline Goulet et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Rapid detection by multiplex PCR of Genomic Islands, prophages and Integrative Conjugative Elements in V. cholerae 7th pandemic variants

(2011) Matteo Spagnoletti et al.   JOURNAL OF MICROBIOLOGICAL METHODS

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Domain shuffling and module engineering of Listeria phage endolysins for enhanced lytic activity and binding affinity

(2011) Mathias Schmelcher et al.   Microbial Biotechnology

Bacteriophages and genetic mobilization in sewage and faecally polluted environments

(2011) Maite Muniesa et al.   Microbial Biotechnology

Chemically immobilized T4-bacteriophage for specific Escherichia coli detection using surface plasmon resonance

(2010) Sunil K. Arya et al.   ANALYST

Identifying Active Phage Lysins through Functional Viral Metagenomics

(2010) J. E. Schmitz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rapid Multiplex Detection and Differentiation of Listeria Cells by Use of Fluorescent Phage Endolysin Cell Wall Binding Domains

(2010) M. Schmelcher et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Food applications of bacterial cell wall hydrolases

(2010) Lien Callewaert et al.   CURRENT OPINION IN BIOTECHNOLOGY

Bacteriophage for Biocontrol of Foodborne Pathogens: Calculations and Considerations

(2010) Steven Hagens et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

Crystal Structure of Bacteriophage SPP1 Distal Tail Protein (gp19.1)

(2010) David Veesler et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Moonlighting bacteriophage proteins derepress staphylococcal pathogenicity islands

(2010) María Ángeles Tormo-Más et al.   NATURE

Crystal structure ofBacillus subtilisSPP1 phage gp22 shares fold similarity with a domain of lactococcal phage p2 RBP

(2010) David Veesler et al.   PROTEIN SCIENCE

The genome sequence and proteome of bacteriophage ΦCPV1 virulent for Clostridium perfringens

(2010) Nikolay V. Volozhantsev et al.   VIRUS RESEARCH

Oriented Immobilization of Bacteriophages for Biosensor Applications

(2009) M. Tolba et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The high-affinity peptidoglycan binding domain of Pseudomonas phage endolysin KZ144

(2009) Yves Briers et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Quantitative characterization of quantum dot-labeled lambda phage forEscherichia colidetection

(2009) Peter B. Yim et al.   BIOTECHNOLOGY AND BIOENGINEERING

Rapid detection and differentiation of the exfoliative toxin A-producing Staphylococcus aureus strains based on ϕETA prophage polymorphisms

(2009) Pavla Holochová et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

The serotype-specific glucose side chain of rhamnose–glucose polysaccharides is essential for adsorption of bacteriophage M102 toStreptococcus mutans

(2009) Yukie Shibata et al.   FEMS MICROBIOLOGY LETTERS

Kinetics of Phage-Mediated Biocontrol of Bacteria

(2009) Stephen T. Abedon   Foodborne Pathogens and Disease

Phage-mediated bioluminescent detection ofBacillus anthracis

(2009) D.A. Schofield et al.   JOURNAL OF APPLIED MICROBIOLOGY

Crystal Structure of a Chimeric Receptor Binding Protein Constructed from Two Lactococcal Phages

(2009) M. Siponen et al.   JOURNAL OF BACTERIOLOGY

Diagnostic Bioluminescent Phage for Detection of Yersinia pestis

(2009) D. A. Schofield et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The Genome of Bacillus subtilis Bacteriophage SPO1

(2009) Charles R. Stewart et al.   JOURNAL OF MOLECULAR BIOLOGY

Fast and accurate automatic structure prediction with HHpred

(2009) Andrea Hildebrand et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Roles of genes 38, 39, and 40 in shutoff of host biosyntheses during infection of Bacillus subtilis by bacteriophage SPO1

(2009) Charles R. Stewart et al.   VIROLOGY

Isolation and Characterization of Bacteriophages Infecting the Fish Pathogen Flavobacterium psychrophilum

(2008) A. R. Stenholm et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Virulent Bacteriophage for Efficient Biocontrol of Listeria monocytogenes in Ready-To-Eat Foods

(2008) S. Guenther et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

In Silico and In Vivo Evaluation of Bacteriophage  EF24C, a Candidate for Treatment of Enterococcus faecalis Infections

(2008) J. Uchiyama et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prophinder: a computational tool for prophage prediction in prokaryotic genomes

(2008) Gipsi Lima-Mendez et al.   BIOINFORMATICS

Tail-associated structural protein gp61 ofStaphylococcus aureusphage φMR11 has bifunctional lytic activity

(2008) Mohammad Rashel et al.   FEMS MICROBIOLOGY LETTERS

Isolation and characterization of a novelEnterococcus faecalisbacteriophage φEF24C as a therapeutic candidate

(2008) Jumpei Uchiyama et al.   FEMS MICROBIOLOGY LETTERS

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

(2008) C. Winstanley et al.   GENOME RESEARCH

Identification and characterization of bacteriophages specific to the catfish pathogen,Edwardsiella ictaluri

(2008) J.K. Walakira et al.   JOURNAL OF APPLIED MICROBIOLOGY

Transport of Phage P22 DNA across the Cytoplasmic Membrane

(2008) G. L. Perez et al.   JOURNAL OF BACTERIOLOGY

Phage SPP1 Reversible Adsorption to Bacillus subtilis Cell Wall Teichoic Acids Accelerates Virus Recognition of Membrane Receptor YueB

(2008) C. Baptista et al.   JOURNAL OF BACTERIOLOGY

Streptococcus equi bacteriophage SeP9 binds to group C carbohydrate but is not infective for the closely related S. zooepidemicus

(2008) Raksha Tiwari et al.   VETERINARY MICROBIOLOGY