A review ofin silicoapproaches for analysis and prediction of HIV-1-human protein–protein interactions

Incorporating the type and direction information in predicting novel regulatory interactions between HIV-1 and human proteins using a biclustering approach

(2014) Anirban Mukhopadhyay et al.   BMC BIOINFORMATICS

Probability Weighted Ensemble Transfer Learning for Predicting Interactions between HIV-1 and Human Proteins

(2013) Suyu Mei   PLoS One

Inhibition of a NEDD8 Cascade Restores Restriction of HIV by APOBEC3G

(2013) David J. Stanley et al.   PLoS Pathogens

A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data

(2012) Min Li et al.   BMC Systems Biology

Mining Quasi-Bicliques from HIV-1-Human Protein Interaction Network: A Multiobjective Biclustering Approach

(2012) Ujjwal Maulik et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Associations between HIV and Human Pathways Revealed by Protein-Protein Interactions and Correlated Gene Expression Profiles

(2012) Kuang-Chi Chen et al.   PLoS One

A Novel Biclustering Approach to Association Rule Mining for Predicting HIV-1–Human Protein Interactions

(2012) Anirban Mukhopadhyay et al.   PLoS One

Gene Ontology-driven inference of protein–protein interactions using inducers

(2011) Stefan R. Maetschke et al.   BIOINFORMATICS

Identification of Essential Proteins Based on Edge Clustering Coefficient

(2011) Jianxin Wang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Supervised learning and prediction of physical interactions between human and HIV proteins

(2011) Matthew D. Dyer et al.   INFECTION GENETICS AND EVOLUTION

Identifying the immunodeficiency gateway proteins in humans and their involvement in microRNA regulation

(2011) Ujjwal Maulik et al.   Molecular BioSystems

Network-Based Prediction and Analysis of HIV Dependency Factors

(2011) T. M. Murali et al.   PLoS Computational Biology

Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins

(2010) Y. Qi et al.   BIOINFORMATICS

The biological context of HIV-1 host interactions reveals subtle insights into a system hijack

(2010) Jonathan E Dickerson et al.   BMC Systems Biology

Evolutionary Constraints Acting on DDX3X Protein Potentially Interferes with Rev-Mediated Nuclear Export of HIV-1 RNA

(2010) Deepak Sharma et al.   PLoS One

Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens

(2010) Janet M Doolittle et al.   Virology Journal

Patterns of HIV-1 Protein Interaction Identify Perturbed Host-Cellular Subsystems

(2010) Jamie I. MacPherson et al.   PLoS Computational Biology

HIV–host interactions: a map of viral perturbation of the host system

(2009) John W Pinney et al.   AIDS

TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples

(2009) Sanghamitra Bandyopadhyay et al.   BIOINFORMATICS

Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs

(2009) Perry Evans et al.   BMC Medical Genomics

Functions of Tat: the versatile protein of human immunodeficiency virus type 1

(2009) B. Romani et al.   JOURNAL OF GENERAL VIROLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Host Cell Factors in HIV Replication: Meta-Analysis of Genome-Wide Studies

(2009) Frederic D. Bushman et al.   PLoS Pathogens

Identifying gene-disease associations using centrality on a literature mined gene-interaction network

(2008) A. Ozgur et al.   BIOINFORMATICS

Global Analysis of Host-Pathogen Interactions that Regulate Early-Stage HIV-1 Replication

(2008) Renate König et al.   CELL

Genome-Scale RNAi Screen for Host Factors Required for HIV Replication

(2008) Honglin Zhou et al.   Cell Host & Microbe

Viral infection and human disease - insights from minimotifs

(2008) Krishna Kadaveru   Frontiers in Bioscience-Landmark

Human immunodeficiency virus type 1, human protein interaction database at NCBI

(2008) W. Fu et al.   NUCLEIC ACIDS RESEARCH

miRecords: an integrated resource for microRNA-target interactions

(2008) F. Xiao et al.   NUCLEIC ACIDS RESEARCH

Null mutations in human and mouse orthologs frequently result in different phenotypes

(2008) B.-Y. Liao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Host Proteins Required for HIV Infection Through a Functional Genomic Screen

(2008) Abraham L. Brass et al.   SCIENCE

Hepatitis C virus NS5A protein binds the SH3 domain of the Fyn tyrosine kinase with high affinity: mutagenic analysis of residues within the SH3 domain that contribute to the interaction

(2008) Holly Shelton et al.   Virology Journal

A Specificity Map for the PDZ Domain Family

(2008) Raffi Tonikian et al.   PLOS BIOLOGY