A survey on prediction of specificity-determining sites in proteins

Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures

(2013) Andrew F Neuwald et al.   BMC BIOINFORMATICS

Predicting functional residues of protein sequence alignments as a feature selection task

(2012) Chris Haddow et al.   International Journal of Data Mining and Bioinformatics

SPEER-SERVER: a web server for prediction of protein specificity determining sites

(2012) Abhijit Chakraborty et al.   NUCLEIC ACIDS RESEARCH

Proteins: Sequence to Structure and Function – Current Status

(2011) Sandhya R. Shenoy et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies

(2010) Pavel V Mazin et al.   Algorithms for Molecular Biology

Identification of subfamily-specific sites based on active sites modeling and clustering

(2010) Raquel C. de Melo-Minardi et al.   BIOINFORMATICS

Spial: analysis of subtype-specific features in multiple sequence alignments of proteins

(2010) A. Wuster et al.   BIOINFORMATICS

Multi-Harmony: detecting functional specificity from sequence alignment

(2010) B. W. Brandt et al.   NUCLEIC ACIDS RESEARCH

Protein interactions and ligand binding: From protein subfamilies to functional specificity

(2010) A. Rausell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates

(2009) R. Matthew Ward et al.   BIOINFORMATICS

Ensemble approach to predict specificity determinants: benchmarking and validation

(2009) Saikat Chakrabarti et al.   BMC BIOINFORMATICS

Combining specificity determining and conserved residues improves functional site prediction

(2009) Olga V Kalinina et al.   BMC BIOINFORMATICS

INTREPID: a web server for prediction of functionally important residues by evolutionary analysis

(2009) S. Sankararaman et al.   NUCLEIC ACIDS RESEARCH

INTREPID—INformation-theoretic TREe traversal for Protein functional site IDentification

(2008) Sriram Sankararaman et al.   BIOINFORMATICS

Characterization and prediction of residues determining protein functional specificity

(2008) John A. Capra et al.   BIOINFORMATICS

The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction

(2008) Jonathan R Manning et al.   BMC BIOINFORMATICS

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids

(2008) David M Kristensen et al.   BMC BIOINFORMATICS