Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases
出版年份 2013 全文链接
标题
Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases
作者
关键词
-
出版物
BRIEFINGS IN BIOINFORMATICS
Volume 16, Issue 1, Pages 45-58
出版商
Oxford University Press (OUP)
发表日期
2013-12-05
DOI
10.1093/bib/bbt085
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding
- (2013) Aleksandra Helwak et al. CELL
- Transcription Factor-MicroRNA-Target Gene Networks Associated with Ovarian Cancer Survival and Recurrence
- (2013) Kristin R. Delfino et al. PLoS One
- Circuitry and Dynamics of Human Transcription Factor Regulatory Networks
- (2012) Shane Neph et al. CELL
- A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
- (2012) C. L. Plaisier et al. GENOME RESEARCH
- MicroRNA and transcription factor co-regulatory network analysis reveals miR-19 inhibits CYLD in T-cell acute lymphoblastic leukemia
- (2012) Huashan Ye et al. NUCLEIC ACIDS RESEARCH
- Integrative analysis of gene and miRNA expression profiles with transcription factor–miRNA feed-forward loops identifies regulators in human cancers
- (2012) Zhenyu Yan et al. NUCLEIC ACIDS RESEARCH
- Young intragenic miRNAs are less coexpressed with host genes than old ones: implications of miRNA–host gene coevolution
- (2012) Chunjiang He et al. NUCLEIC ACIDS RESEARCH
- MAGIA2: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update)
- (2012) A. Bisognin et al. NUCLEIC ACIDS RESEARCH
- Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium
- (2012) J. Wang et al. NUCLEIC ACIDS RESEARCH
- A Novel YY1-miR-1 Regulatory Circuit in Skeletal Myogenesis Revealed by Genome-Wide Prediction of YY1-miRNA Network
- (2012) Leina Lu et al. PLoS One
- Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma
- (2012) Jingchun Sun et al. PLoS Computational Biology
- MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model
- (2011) Antony Le Béchec et al. BMC BIOINFORMATICS
- Systems biology of interstitial lung diseases: integration of mRNA and microRNA expression changes
- (2011) Ji-Hoon Cho et al. BMC Medical Genomics
- Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
- (2011) B.-K. Lee et al. GENOME RESEARCH
- Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs
- (2011) David M Garcia et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- mirConnX: condition-specific mRNA-microRNA network integrator
- (2011) G. T. Huang et al. NUCLEIC ACIDS RESEARCH
- TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
- (2011) T. Vergoulis et al. NUCLEIC ACIDS RESEARCH
- ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor
- (2011) Jing Qin et al. NUCLEIC ACIDS RESEARCH
- AnimalTFDB: a comprehensive animal transcription factor database
- (2011) H.-M. Zhang et al. NUCLEIC ACIDS RESEARCH
- A Curated Database of miRNA Mediated Feed-Forward Loops Involving MYC as Master Regulator
- (2011) Mariama El Baroudi et al. PLoS One
- MiR-34a Expression Has an Effect for Lower Risk of Metastasis and Associates with Expression Patterns Predicting Clinical Outcome in Breast Cancer
- (2011) Hanna Peurala et al. PLoS One
- A Perspective on Cancer Cell Metastasis
- (2011) C. L. Chaffer et al. SCIENCE
- The Role of Incoherent MicroRNA-Mediated Feedforward Loops in Noise Buffering
- (2011) Matteo Osella et al. PLoS Computational Biology
- Cancer Stem Cells and Epithelial-to-Mesenchymal Transition (EMT)-Phenotypic Cells: Are They Cousins or Twins?
- (2011) Dejuan Kong et al. Cancers
- MiRonTop: mining microRNAs targets across large scale gene expression studies
- (2010) K. Le Brigand et al. BIOINFORMATICS
- ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments
- (2010) Alexander Lachmann et al. BIOINFORMATICS
- CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse
- (2010) Olivier Friard et al. BMC BIOINFORMATICS
- A Novel microRNA and transcription factor mediated regulatory network in schizophrenia
- (2010) An-Yuan Guo et al. BMC Systems Biology
- Frequent Downregulation of miR-34 Family in Human Ovarian Cancers
- (2010) D. C. Corney et al. CLINICAL CANCER RESEARCH
- MicroRNA control of signal transduction
- (2010) Masafumi Inui et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- miRTarBase: a database curates experimentally validated microRNA–target interactions
- (2010) Sheng-Da Hsu et al. NUCLEIC ACIDS RESEARCH
- Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
- (2010) Doron Betel et al. GENOME BIOLOGY
- Cell-cycle regulator E2F1 and microRNA-223 comprise an autoregulatory negative feedback loop in acute myeloid leukemia
- (2009) J. A. Pulikkan et al. BLOOD
- A MicroRNA Imparts Robustness against Environmental Fluctuation during Development
- (2009) Xin Li et al. CELL
- A census of human transcription factors: function, expression and evolution
- (2009) Juan M. Vaquerizas et al. NATURE REVIEWS GENETICS
- TransmiR: a transcription factor–microRNA regulation database
- (2009) Juan Wang et al. NUCLEIC ACIDS RESEARCH
- NF-κB–YY1–miR-29 Regulatory Circuitry in Skeletal Myogenesis and Rhabdomyosarcoma
- (2008) Huating Wang et al. CANCER CELL
- Emerging Role of miR-106b-25/miR-17-92 Clusters in the Control of Transforming Growth Factor Signaling
- (2008) F. Petrocca et al. CANCER RESEARCH
- A Double-Negative Feedback Loop between ZEB1-SIP1 and the microRNA-200 Family Regulates Epithelial-Mesenchymal Transition
- (2008) C. P. Bracken et al. CANCER RESEARCH
- A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity
- (2008) N. J. Martinez et al. GENES & DEVELOPMENT
- 17p13/TP53 deletion in B-CLL patients is associated with microRNA-34a downregulation
- (2008) M K Dijkstra et al. LEUKEMIA
- Comprehensive genomic characterization defines human glioblastoma genes and core pathways
- (2008) Roger McLendon et al. NATURE
- The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1
- (2008) Philip A. Gregory et al. NATURE CELL BIOLOGY
- miRecords: an integrated resource for microRNA-target interactions
- (2008) F. Xiao et al. NUCLEIC ACIDS RESEARCH
- miR2Disease: a manually curated database for microRNA deregulation in human disease
- (2008) Q. Jiang et al. NUCLEIC ACIDS RESEARCH
- miR-17 and miR-20a temper an E2F1-induced G1 checkpoint to regulate cell cycle progression
- (2008) M T Pickering et al. ONCOGENE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now