Semantic similarity analysis of protein data: assessment with biological features and issues

Technologies of protein interactomics: A review

(2011) A. S. Ivanov et al.   RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

(2010) G. Yu et al.   BIOINFORMATICS

An improved method for scoring protein-protein interactions using semantic similarity within the Gene Ontology

(2010) Shobhit Jain et al.   BMC BIOINFORMATICS

Revealing and avoiding bias in semantic similarity scores for protein pairs

(2010) Jing Wang et al.   BMC BIOINFORMATICS

GOVis, A Gene Ontology Visualization Tool Based on Multi-Dimensional Values

(2010) Zi Ning et al.   PROTEIN AND PEPTIDE LETTERS

Functionally guided alignment of protein interaction networks for module detection

(2009) Waqar Ali et al.   BIOINFORMATICS

GS2: an efficiently computable measure of GO-based similarity of gene sets

(2009) T. Ruths et al.   BIOINFORMATICS

FunSimMat update: new features for exploring functional similarity

(2009) Andreas Schlicker et al.   NUCLEIC ACIDS RESEARCH

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

Fast Gene Ontology based clustering for microarray experiments

(2009) Kristian Ovaska et al.   BioData Mining

A relation based measure of semantic similarity for Gene Ontology annotations

(2008) Brendan Sheehan et al.   BMC BIOINFORMATICS

Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data

(2008) Tao Xu et al.   BMC BIOINFORMATICS

Defining functional distances over Gene Ontology

(2008) Angela del Pozo et al.   BMC BIOINFORMATICS

Gene Ontology term overlap as a measure of gene functional similarity

(2008) Meeta Mistry et al.   BMC BIOINFORMATICS

Use and misuse of the gene ontology annotations

(2008) Seung Yon Rhee et al.   NATURE REVIEWS GENETICS

Up-to-date catalogues of yeast protein complexes

(2008) Shuye Pu et al.   NUCLEIC ACIDS RESEARCH

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences

(2007) Razib M. Othman et al.   JOURNAL OF BIOMEDICAL INFORMATICS