Investigating the evolution of Lantaneae (Verbenaceae) using multiple loci

A Taxonomic Revision of the GenusPhyla(Verbenaceae)1

(2012) Nataly O'Leary et al.   ANNALS OF THE MISSOURI BOTANICAL GARDEN

A new subfamilial and tribal classification of the pantropical flowering plant family Annonaceae informed by molecular phylogenetics

(2012) LARS W. CHATROU et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Species delimitation in Lippia section Goniostachyum (Verbenaceae) using the phylogenetic species concept

(2012) Nataly O'Leary et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogeny, adaptive radiation, and historical biogeography in Bromeliaceae: Insights from an eight-locus plastid phylogeny

(2011) Thomas J. Givnish et al.   AMERICAN JOURNAL OF BOTANY

Phylogenetic utility of the nuclear genes AGAMOUS 1 and PHYTOCHROME B in palms (Arecaceae): an example within Bactridinae

(2011) Bertha Ludeña et al.   ANNALS OF BOTANY

Molecular systematics of the Cactaceae

(2011) Rolando T. Bárcenas et al.   CLADISTICS

Joint Inference of Population Assignment and Demographic History

(2011) Sang Chul Choi et al.   GENETICS

Systematics and Phylogeny of Neotropical Riverweeds (Podostemaceae: Podostemoideae)

(2011) Nicholas P. Tippery et al.   SYSTEMATIC BOTANY

A molecular phylogeny and classification of Verbenaceae

(2010) Hannah E. Marx et al.   AMERICAN JOURNAL OF BOTANY

Phylogenetic estimation of the core Bromelioids with an emphasis on the genus Aechmea (Bromeliaceae)

(2010) Chodon Sass et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A molecular phylogeny and classification of Bignoniaceae

(2009) Richard G. Olmstead et al.   AMERICAN JOURNAL OF BOTANY

Woody Plant Diversity, Evolution, and Ecology in the Tropics: Perspectives from Seasonally Dry Tropical Forests

(2009) R. Toby Pennington et al.   Annual Review of Ecology Evolution and Systematics

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

(2009) Laura S. Kubatko et al.   BIOINFORMATICS

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

The utility of nuclear conserved ortholog set II (COSII) genomic regions for species-level phylogenetic inference in Lycium (Solanaceae)

(2009) Rachel A. Levin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny of Bromelioideae (Bromeliaceae) inferred from nuclear and plastid DNA loci reveals the evolution of the tank habit within the subfamily

(2009) Katharina Schulte et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

An empirical demonstration of using pentatricopeptide repeat (PPR) genes as plant phylogenetic tools: Phylogeny of Verbenaceae and the Verbena complex

(2009) Yao-Wu Yuan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic biome conservatism on a global scale

(2009) Michael D. Crisp et al.   NATURE

The pentatricopeptide repeat (PPR) gene family, a tremendous resource for plant phylogenetic studies

(2009) Yao-Wu Yuan et al.   NEW PHYTOLOGIST

Recent assembly of the Cerrado, a neotropical plant diversity hotspot, by in situ evolution of adaptations to fire

(2009) M. F. Simon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Species Trees: Methods of Phylogenetic Analysis When There Is Incongruence across Genes

(2009) L. Lacey Knowles   SYSTEMATIC BIOLOGY

Reassignment of Species of Paraphyletic Junellia s. l. to the New Genus Mulguraea (Verbenaceae) and New Circumscription of Genus Junellia: Molecular and Morphological Congruence

(2009) Nataly O'Leary et al.   SYSTEMATIC BOTANY

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

Species Tree Inference by Minimizing Deep Coalescences

(2009) Cuong Than et al.   PLoS Computational Biology

Evolution and phylogenetic utility of the PHOT gene duplicates in the Verbena complex (Verbenaceae): dramatic intron size variation and footprint of ancestral recombination

(2008) Yao-Wu Yuan et al.   AMERICAN JOURNAL OF BOTANY

Molecular phylogenetics of the species-rich neotropical genus Swartzia (Leguminosae, Papilionoideae) and related genera of the swartzioid clade

(2008) Benjamin M. Torke et al.   AMERICAN JOURNAL OF BOTANY

BEST: Bayesian estimation of species trees under the coalescent model

(2008) L. Liu   BIOINFORMATICS

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic utility of 141 low-copy nuclear regions in taxa at different taxonomic levels in two distantly related families of rosids

(2008) P. Roxanne Steele et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A species-level phylogenetic study of the Verbena complex (Verbenaceae) indicates two independent intergeneric chloroplast transfers

(2008) Yao-Wu Yuan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Phylogenetic Relationships of the Neotropical Genus Dioon (Cycadales, Zamiaceae) Based on Nuclear and Chloroplast DNA Sequence Data

(2008) Dolores González et al.   SYSTEMATIC BOTANY