Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks

Incorporating prior knowledge into Gene Network Study

(2013) Zixing Wang et al.   BIOINFORMATICS

Integrative approaches for finding modular structure in biological networks

(2013) Koyel Mitra et al.   NATURE REVIEWS GENETICS

Beyond differential expression: the quest for causal mutations and effector molecules

(2012) Nicholas J Hudson et al.   BMC GENOMICS

Differential network biology

(2012) Trey Ideker et al.   Molecular Systems Biology

Navigating cancer network attractors for tumor-specific therapy

(2012) Pau Creixell et al.   NATURE BIOTECHNOLOGY

Assessment Method for a Power Analysis to Identify Differentially Expressed Pathways

(2012) Shailesh Tripathi et al.   PLoS One

The calcineurin B subunit induces TNF-related apoptosis-inducing ligand (TRAIL) expression via CD11b–NF-κB pathway in RAW264.7 macrophages

(2011) Zhenyi Su et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A multiple network learning approach to capture system-wide condition-specific responses

(2011) S. Roy et al.   BIOINFORMATICS

DDN: a caBIG® analytical tool for differential network analysis

(2011) Bai Zhang et al.   BIOINFORMATICS

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

The Rho1 GTPase Acts Together With a Vacuolar Glutathione S-Conjugate Transporter to Protect Yeast Cells From Oxidative Stress

(2011) Mid Eum Lee et al.   GENETICS

Rewiring makes the difference

(2011) A. Califano   Molecular Systems Biology

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data

(2010) Antonio Reverter et al.   BIOINFORMATICS

A statistical framework for differential network analysis from microarray data

(2010) Ryan Gill et al.   BMC BIOINFORMATICS

Network medicine: a network-based approach to human disease

(2010) Albert-László Barabási et al.   NATURE REVIEWS GENETICS

Recovering time-varying networks of dependencies in social and biological studies

(2009) A. Ahmed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation

(2009) Nicholas J. Hudson et al.   PLoS Computational Biology

Differential dependency network analysis to identify condition-specific topological changes in biological networks

(2008) Bai Zhang et al.   BIOINFORMATICS