Integrating external biological knowledge in the construction of regulatory networks from time-series expression data

Construction of regulatory networks using expression time-series data of a genotyped population

(2011) K. Y. Yeung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sparse regulatory networks

(2010) Gareth M. James et al.   Annals of Applied Statistics

Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge

(2010) Mika Gustafsson et al.   PLoS One

A Parallel Implementation of the Network Identification by Multiple Regression (NIR) Algorithm to Reverse-Engineer Regulatory Gene Networks

(2010) Francesco Gregoretti et al.   PLoS One

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

(2010) Vân Anh Huynh-Thu et al.   PLoS One

Characterizing Dynamic Changes in the Human Blood Transcriptional Network

(2010) Jun Zhu et al.   PLoS Computational Biology

A new multiple regression approach for the construction of genetic regulatory networks

(2009) Shu-Qin Zhang et al.   ARTIFICIAL INTELLIGENCE IN MEDICINE

Incorporating Predictor Network in Penalized Regression with Application to Microarray Data

(2009) Wei Pan et al.   BIOMETRICS

Advances in systems biology are enhancing our understanding of disease and moving us closer to novel disease treatments

(2009) Eric E. Schadt et al.   GENETICA

Molecular networks as sensors and drivers of common human diseases

(2009) Eric E. Schadt   NATURE

Degree dependence in rates of transcription factor evolution explains the unusual structure of transcription networks

(2009) A. J. Stewart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Learning a Prior on Regulatory Potential from eQTL Data

(2009) Su-In Lee et al.   PLoS Genetics

Seeded Bayesian Networks: Constructing genetic networks from microarray data

(2008) Amira Djebbari et al.   BMC Systems Biology

Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

(2008) Jun Zhu et al.   NATURE GENETICS

Phenotypic engineering by reprogramming gene transcription using novel artificial transcription factors in Escherichia coli

(2008) J. Y. Lee et al.   NUCLEIC ACIDS RESEARCH