Removing bias against membrane proteins in interaction networks

Autophagy: assays and artifacts

(2010) Sandra Barth et al.   JOURNAL OF PATHOLOGY

Network organization of the human autophagy system

(2010) Christian Behrends et al.   NATURE

Link communities reveal multiscale complexity in networks

(2010) Yong-Yeol Ahn et al.   NATURE

Autophagy in unicellular eukaryotes

(2010) J. A. K. W. Kiel   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

Protein-protein interaction as a predictor of subcellular location

(2009) Chang Jin Shin et al.   BMC Systems Biology

A genome-wide screen in Saccharomyces cerevisiae reveals pathways affected by arsenic toxicity

(2009) Xue Zhou et al.   GENOMICS

Dynamics and diversity in autophagy mechanisms: lessons from yeast

(2009) Hitoshi Nakatogawa et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Complex network measures of brain connectivity: Uses and interpretations

(2009) Mikail Rubinov et al.   NEUROIMAGE

Influence of Protein Abundance on High-Throughput Protein-Protein Interaction Detection

(2009) Joseph Ivanic et al.   PLoS One

Comprehensive Characterization of Genes Required for Protein Folding in the Endoplasmic Reticulum

(2009) M. C. Jonikas et al.   SCIENCE

iRefIndex: A consolidated protein interaction database with provenance

(2008) Sabry Razick et al.   BMC BIOINFORMATICS

Fluorescent biosensors of protein function

(2008) Schuyler B VanEngelenburg et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Challenges and Rewards of Interaction Proteomics

(2008) Shoshana J. Wodak et al.   MOLECULAR & CELLULAR PROTEOMICS

A Proteomics Analysis of Yeast Mot1p Protein-Protein Associations

(2008) Diana R. Arnett et al.   MOLECULAR & CELLULAR PROTEOMICS

An empirical framework for binary interactome mapping

(2008) Kavitha Venkatesan et al.   NATURE METHODS

An experimentally derived confidence score for binary protein-protein interactions

(2008) Pascal Braun et al.   NATURE METHODS

Membrane proteins and membrane proteomics

(2008) Sandra Tan et al.   PROTEOMICS

An in Vivo Map of the Yeast Protein Interactome

(2008) K. Tarassov et al.   SCIENCE

Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality

(2008) Elena Zotenko et al.   PLoS Computational Biology

Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function

(2008) Weidong Tian et al.   GENOME BIOLOGY

Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy

(2008) Wan Kim et al.   GENOME BIOLOGY