TF-Cluster: A pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM)

Genetic Engineering for Modern Agriculture: Challenges and Perspectives

(2010) Ron Mittler et al.   Annual Review of Plant Biology

TF-finder: A software package for identifying transcription factors involved in biological processes using microarray data and existing knowledge base

(2010) Xiaoqi Cui et al.   BMC BIOINFORMATICS

Cdx1 refines positional identity of the vertebrate hindbrain by directly repressing Mafb expression

(2010) K. Sturgeon et al.   DEVELOPMENT

Expression of DOF genes identifies early stages of vascular development in Arabidopsis leaves

(2010) Jason Gardiner et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Induction of Pluripotent Stem Cells from Human Third Molar Mesenchymal Stromal Cells

(2010) Yasuaki Oda et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reprogramming with defined factors: from induced pluripotency to induced transdifferentiation

(2010) M. Masip et al.   MOLECULAR HUMAN REPRODUCTION

MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor

(2010) Alexandra Schlereth et al.   NATURE

A basic helix-loop-helix transcription factor controls cell growth and size in root hairs

(2010) Keke Yi et al.   NATURE GENETICS

Arabidopsis Tyrosylprotein Sulfotransferase Acts in the Auxin/PLETHORA Pathway in Regulating Postembryonic Maintenance of the Root Stem Cell Niche

(2010) W. Zhou et al.   PLANT CELL

SOMBRERO, BEARSKIN1, and BEARSKIN2 Regulate Root Cap Maturation in Arabidopsis

(2010) T. Bennett et al.   PLANT CELL

JAGGED LATERAL ORGAN (JLO) controls auxin dependent patterning during development of the Arabidopsis embryo and root

(2010) Marina Bureau et al.   PLANT MOLECULAR BIOLOGY

Characterization of NAC domain transcription factors implicated in control of vascular cell differentiation in Arabidopsis and Populus

(2010) Emily H. Grant et al.   PLANTA

Cited2 Is an Essential Regulator of Adult Hematopoietic Stem Cells

(2009) Kamil R. Kranc et al.   Cell Stem Cell

Generation of Induced Pluripotent Stem Cells from Human Cord Blood Using OCT4 and SOX2

(2009) Alessandra Giorgetti et al.   Cell Stem Cell

GATA3 Is Selectively Expressed in the Trophectoderm of Peri-implantation Embryo and Directly RegulatesCdx2Gene Expression

(2009) Pratik Home et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Zfp206, Oct4, and Sox2 Are Integrated Components of a Transcriptional Regulatory Network in Embryonic Stem Cells

(2009) Hong-bing Yu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Novel DNMT3B Splice Variant Expressed in Tumor and Pluripotent Cells Modulates Genomic DNA Methylation Patterns and Displays Altered DNA Binding

(2009) S. Gopalakrishnan et al.   MOLECULAR CANCER RESEARCH

Nucleosome positioning and gene regulation: advances through genomics

(2009) Cizhong Jiang et al.   NATURE REVIEWS GENETICS

Pias3-Dependent SUMOylation Directs Rod Photoreceptor Development

(2009) Akishi Onishi et al.   NEURON

An Auxin Gradient and Maximum in the Arabidopsis Root Apex Shown by High-Resolution Cell-Specific Analysis of IAA Distribution and Synthesis

(2009) S. V. Petersson et al.   PLANT CELL

AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation

(2009) Takuya Yoshida et al.   PLANT JOURNAL

The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis

(2009) Rosangela Sozzani et al.   PLANT MOLECULAR BIOLOGY

Conservation of Lotus and Arabidopsis Basic Helix-Loop-Helix Proteins Reveals New Players in Root Hair Development

(2009) B. Karas et al.   PLANT PHYSIOLOGY

LBD18/ASL20 Regulates Lateral Root Formation in Combination with LBD16/ASL18 Downstream of ARF7 and ARF19 in Arabidopsis

(2009) H. W. Lee et al.   PLANT PHYSIOLOGY

Biphasic Myopathic Phenotype of Mouse DUX, an ORF within Conserved FSHD-Related Repeats

(2009) Darko Bosnakovski et al.   PLoS One

Insight into the early steps of root hair formation revealed by the procuste1 cellulose synthase mutant of Arabidopsis thaliana

(2008) Sunil K Singh et al.   BMC PLANT BIOLOGY

Promoter CpG Methylation Contributes to ES Cell Gene Regulation in Parallel with Oct4/Nanog, PcG Complex, and Histone H3 K4/K27 Trimethylation

(2008) Shaun D. Fouse et al.   Cell Stem Cell

Oscillating signaling pathways during embryonic development

(2008) Alexander Aulehla et al.   CURRENT OPINION IN CELL BIOLOGY

The regulatory mechanisms that underlie inappropriate transcription of the myogenic determination gene Myf5 in the central nervous system

(2008) Philippe Daubas et al.   DEVELOPMENTAL BIOLOGY

The NAC Domain Transcription Factors FEZ and SOMBRERO Control the Orientation of Cell Division Plane in Arabidopsis Root Stem Cells

(2008) Viola Willemsen et al.   DEVELOPMENTAL CELL

Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana

(2008) Y. Li et al.   GENES & DEVELOPMENT

Differential expression of the embryo/cancer gene ECSA(DPPA2), the cancer/testis gene BORIS and the pluripotency structural gene OCT4, in human preimplantation development

(2008) M. Monk et al.   MOLECULAR HUMAN REPRODUCTION

In vivo reprogramming of adult pancreatic exocrine cells to β-cells

(2008) Qiao Zhou et al.   NATURE

Efficient and rapid generation of induced pluripotent stem cells from human keratinocytes

(2008) Trond Aasen et al.   NATURE BIOTECHNOLOGY

A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2008) R. Zhong et al.   PLANT CELL

Mutations in AtPS1 (Arabidopsis thaliana Parallel Spindle 1) Lead to the Production of Diploid Pollen Grains

(2008) Isabelle d'Erfurth et al.   PLoS Genetics

Coupling and coordination in gene expression processes: a systems biology view

(2007) Suzanne Komili et al.   NATURE REVIEWS GENETICS