Identification and characterization of histone modification gene family reveal their critical responses to flower induction in apple

A transcriptome analysis of two apple ( Malus × domestica ) cultivars with different flowering abilities reveals a gene network module associated with floral transitions

(2018) Youmei Li et al.   SCIENTIA HORTICULTURAE

Phylogenetic analysis of IDD gene family and characterization of its expression in response to flower induction in Malus

(2017) Sheng Fan et al.   MOLECULAR GENETICS AND GENOMICS

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

(2017) Nicolas Daccord et al.   NATURE GENETICS

Genome-Wide Analysis and Expression Profiles of the MYB Genes in Brachypodium distachyon

(2017) Shoukun Chen et al.   PLANT AND CELL PHYSIOLOGY

Single-base methylome analysis reveals dynamic epigenomic differences associated with water deficit in apple

(2017) Jidi Xu et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of TPS family members in apple ( Malus x domestica Borkh.) and the effect of sucrose sprays on TPS expression and floral induction

(2017) Lisha Du et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Identification, Classification, and Expression Analysis of GRAS Gene Family in Malus domestica

(2017) Sheng Fan et al.   Frontiers in Physiology

Analysis of transcripts differentially expressed between fruited and deflowered ‘Gala’ adult trees: a contribution to biennial bearing understanding in apple

(2016) B. Guitton et al.   BMC PLANT BIOLOGY

Proteome Analyses Using iTRAQ Labeling Reveal Critical Mechanisms in Alternate Bearing Malus prunifolia

(2016) Sheng Fan et al.   JOURNAL OF PROTEOME RESEARCH

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Structural and Functional Analysis of the GRAS Gene Family in Grapevine Indicates a Role of GRAS Proteins in the Control of Development and Stress Responses

(2016) Jérôme Grimplet et al.   Frontiers in Plant Science

Comparative phylogenetic analysis and transcriptional profiling of MADS-box gene family identified DAM and FLC-like genes in apple (Malusx domestica)

(2016) Gulshan Kumar et al.   Scientific Reports

Transcriptome analysis of an apple (Malus×domestica) yellow fruit somatic mutation identifies a gene network module highly associated with anthocyanin and epigenetic regulation

(2015) Islam El-Sharkawy et al.   JOURNAL OF EXPERIMENTAL BOTANY

Shoot bending promotes flower bud formation by miRNA-mediated regulation in apple (Malus domesticaBorkh.)

(2015) Libo Xing et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-wide identification of sweet orange (Citrus sinensis) histone modification gene families and their expression analysis during the fruit development and fruit-blue mold infection process

(2015) Jidi Xu et al.   Frontiers in Plant Science

Evaluating synteny for improved comparative studies

(2014) C. G. Ghiurcuta et al.   BIOINFORMATICS

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Fruit load induces changes in global gene expression and in abscisic acid (ABA) and indole acetic acid (IAA) homeostasis in citrus buds

(2014) Liron Shalom et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Arabidopsis Class II Sirtuin Is a Lysine Deacetylase and Interacts with Mitochondrial Energy Metabolism

(2014) A.-C. Konig et al.   PLANT PHYSIOLOGY

The roles of histone acetylation in seed performance and plant development

(2014) Zhi Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles

(2013) Riccardo Aiese Cigliano et al.   BMC GENOMICS

Genome-wide identification of alternate bearing-associated microRNAs (miRNAs) in olive (Olea europaea L.)

(2013) Huriye Yanik et al.   BMC PLANT BIOLOGY

HDA18 Affects Cell Fate inArabidopsisRoot Epidermis via Histone Acetylation at Four Kinase Genes

(2013) Cui Liu et al.   PLANT CELL

Histone deacetylases and their functions in plants

(2013) Xujun Ma et al.   PLANT CELL REPORTS

The Methylation of the PcMYB10 Promoter Is Associated with Green-Skinned Sport in Max Red Bartlett Pear

(2013) Z. Wang et al.   PLANT PHYSIOLOGY

Genome-wide identification and analysis of the SBP-box family genes in apple (Malus × domestica Borkh.)

(2013) Jun Li et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

DNA Methylation Mediated Control of Gene Expression Is Critical for Development of Crown Gall Tumors

(2013) Jochen Gohlke et al.   PLoS Genetics

Mutations in HISTONE ACETYLTRANSFERASE1 affect sugar response and gene expression in Arabidopsis

(2013) Timothy J. Heisel et al.   Frontiers in Plant Science

Arabidopsis histone deacetylase HDA9 regulates flowering time through repression of AGL19

(2012) Wanhui Kim et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19

(2012) N. T. Krogan et al.   DEVELOPMENT

Requirement of histone acetyltransferases HAM1 and HAM2 for epigenetic modification of FLC in regulating flowering in Arabidopsis

(2012) Jun Xiao et al.   JOURNAL OF PLANT PHYSIOLOGY

OsVIL2 functions with PRC2 to induce flowering by repressingOsLFL1in rice

(2012) Jungil Yang et al.   PLANT JOURNAL

HDA19 is required for the repression of salicylic acid biosynthesis and salicylic acid-mediated defense responses in Arabidopsis

(2012) Sun-Mee Choi et al.   PLANT JOURNAL

Divergence of duplicate genes in exon-intron structure

(2012) G. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone modifications in transcriptional activation during plant development

(2011) Alexandre Berr et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis Putative Deacetylase AtSRT2 Regulates Basal Defense by Suppressing PAD4, EDS5 and SID2 Expression

(2011) C. Wang et al.   PLANT AND CELL PHYSIOLOGY

Genome-wide analysis of the SET DOMAIN GROUP family in Grapevine

(2011) Felipe Aquea et al.   PLANT CELL REPORTS

Role of HD2 genes in seed germination and early seedling growth in Arabidopsis

(2011) Adam Colville et al.   PLANT CELL REPORTS

HISTONE DEACETYLASE6 Interacts with FLOWERING LOCUS D and Regulates Flowering in Arabidopsis

(2011) C.-W. Yu et al.   PLANT PHYSIOLOGY

Relation of carbohydrate reserves with the forthcoming crop, flower formation and photosynthetic rate, in the alternate bearing ‘Salustiana’ sweet orange (Citrus sinensis L.)

(2011) C. Monerri et al.   SCIENTIA HORTICULTURAE

Histone Acetyltransferase AtGCN5/HAG1 Is a Versatile Regulator of Developmental and Inducible Gene Expression in Arabidopsis

(2010) Caroline Servet et al.   Molecular Plant

Epigenetic control of plant immunity

(2010) MARÍA E. ALVAREZ et al.   MOLECULAR PLANT PATHOLOGY

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

Correlation Between Ka/Ks and Ks is Related to Substitution Model and Evolutionary Lineage

(2009) Jun Li et al.   JOURNAL OF MOLECULAR EVOLUTION

Regulation of Carotenoid Composition and Shoot Branching in Arabidopsis by a Chromatin Modifying Histone Methyltransferase, SDG8

(2009) C. I. Cazzonelli et al.   PLANT CELL

Repression of FLOWERING LOCUS T Chromatin by Functionally Redundant Histone H3 Lysine 4 Demethylases in Arabidopsis

(2009) Ju-Hee Jeong et al.   PLoS One

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis

(2008) David Latrasse et al.   BMC PLANT BIOLOGY

HDA6 is required for jasmonate response, senescence and flowering in Arabidopsis

(2008) K. Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative Analysis of JmjC Domain-containing Proteins Reveals the Potential Histone Demethylases inArabidopsisand Rice

(2008) Falong Lu et al.   Journal of Integrative Plant Biology

A Rapid and effective method for RNA extraction from different tissues of grapevine and other woody plants

(2008) Giorgio Gambino et al.   PHYTOCHEMICAL ANALYSIS

Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids

(2008) E. Lyons et al.   PLANT PHYSIOLOGY