Attack of the clones: whole genome-based characterization of two closely related enterohemorrhagic Escherichia coli O26 epidemic lineages

A case of haemolytic uraemic syndrome (HUS) revealed an outbreak of Shiga toxin-2-producing Escherichia coli O26:H11 infection in a nursery, with long-lasting shedders and person-to-person transmission, Italy 2015

(2018) Gaia Scavia et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Real-time genomic investigation underlying the public health response to a Shiga toxin-producing Escherichia coli O26:H11 outbreak in a nursery

(2017) J. MORAN-GILAD et al.   EPIDEMIOLOGY AND INFECTION

GenBank

(2017) Dennis A Benson et al.   NUCLEIC ACIDS RESEARCH

Case Finding Using Syndromic Surveillance Data During an Outbreak of Shiga Toxin–Producing Escherichia coli O26 Infections, Oregon, 2015

(2017) Jonas Z. Hines et al.   PUBLIC HEALTH REPORTS

Differences in Ribosome Binding and Sarcin/Ricin Loop Depurination by Shiga and Ricin Holotoxins

(2017) Xiao-Ping Li et al.   Toxins

The Mobilome; A Major Contributor to Escherichia coli stx2-Positive O26:H11 Strains Intra-Serotype Diversity

(2017) Sabine Delannoy et al.   Frontiers in Microbiology

Identification of a New Virulent Clade in Enterohemorrhagic Escherichia coli O26:H11/H- Sequence Type 29

(2017) Nozomi Ishijima et al.   Scientific Reports

Community-wide outbreaks of haemolytic uraemic syndrome associated with Shiga toxin-producing Escherichia coli O26 in Italy and Romania: a new challenge for the European Union

(2016) Ettore Severi et al.   Eurosurveillance

Community-wide outbreak of haemolytic uraemic syndrome associated with Shiga toxin 2-producingEscherichia coliO26:H11 in southern Italy, summer 2013

(2016) Cinzia Germinario et al.   Eurosurveillance

Real-Time Genome Sequencing of Resistant Bacteria Provides Precision Infection Control in an Institutional Setting

(2016) Alexander Mellmann et al.   JOURNAL OF CLINICAL MICROBIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Enterohemorrhagic Escherichia coli outbreaks related to childcare facilities in Japan, 2010–2013

(2015) Atsuhiro Kanayama et al.   BMC INFECTIOUS DISEASES

The mosaic genome structure and phylogeny of Shiga toxin-producing Escherichia coli O104:H4 is driven by short-term adaptation

(2015) K. Zhou et al.   CLINICAL MICROBIOLOGY AND INFECTION

The epidemiology, microbiology and clinical impact of Shiga toxin-producing Escherichia coli in England, 2009–2012

(2015) L. BYRNE et al.   EPIDEMIOLOGY AND INFECTION

Shiga toxins and stx phages: highly diverse entities

(2015) Alejandra Krüger et al.   MICROBIOLOGY-SGM

The Shiga toxin 2 production level in enterohemorrhagic Escherichia coli O157:H7 is correlated with the subtypes of toxin-encoding phage

(2015) Yoshitoshi Ogura et al.   Scientific Reports

The utility and public health implications of PCR and whole genome sequencing for the detection and investigation of an outbreak of Shiga toxin-producing Escherichia coli serogroup O26:H11

(2014) T. J. DALLMAN et al.   EPIDEMIOLOGY AND INFECTION

Outbreaks of non-O157 Shiga toxin-producing Escherichia coli infection: USA

(2014) R. E. LUNA-GIERKE et al.   EPIDEMIOLOGY AND INFECTION

Characteristics of Emerging Human-Pathogenic Escherichia coli O26:H11 Strains Isolated in France between 2010 and 2013 and Carrying thestx2dGene Only

(2014) Sabine Delannoy et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

(2014) Rolf S. Kaas et al.   PLoS One

Detection of the Emerging Shiga Toxin-Producing Escherichia coli O26:H11/H−Sequence Type 29 (ST29) Clone in Human Patients and Healthy Cattle in Switzerland

(2013) Claudio Zweifel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enterohemorrhagic Escherichia coli O26:H11/H−: A New Virulent Clone Emerges in Europe

(2013) Martina Bielaszewska et al.   CLINICAL INFECTIOUS DISEASES

Increased Recognition of Non-O157 Shiga Toxin–Producing Escherichia coli Infections in the United States During 2000–2010: Epidemiologic Features and Comparison with E. coli O157 Infections

(2013) L. Hannah Gould et al.   Foodborne Pathogens and Disease

Evolution of Enterohemorrhagic Escherichia coli O26 Based on Single-Nucleotide Polymorphisms

(2013) Stefan Bletz et al.   Genome Biology and Evolution

Shiga toxin-producing Escherichia coli strains from cattle as a source of the Stx2a bacteriophages present in enteroaggregative Escherichia coli O104:H4 strains

(2013) Lothar Beutin et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

BLAST: a more efficient report with usability improvements

(2013) Grzegorz M. Boratyn et al.   NUCLEIC ACIDS RESEARCH

Enterohemorrhagic Escherichia coli as Causes of Hemolytic Uremic Syndrome in the Czech Republic

(2013) Monika Marejková et al.   PLoS One

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Need for Long-term Follow-up in Enterohemorrhagic Escherichia coli–Associated Hemolytic Uremic Syndrome Due to Late-Emerging Sequelae

(2012) Alejandra Rosales et al.   CLINICAL INFECTIOUS DISEASES

Fatal case of diarrhea-associated hemolytic uremic syndrome with severe neurologic involvement

(2012) Jakub Zieg et al.   PEDIATRICS INTERNATIONAL

A Comparison of Shiga-Toxin 2 Bacteriophage from Classical Enterohemorrhagic Escherichia coli Serotypes and the German E. coli O104:H4 Outbreak Strain

(2012) Chad R. Laing et al.   PLoS One

Top-Down Proteomic Identification of Furin-Cleavedα-Subunit of Shiga Toxin 2 fromEscherichia coliO157:H7 Using MALDI-TOF-TOF-MS/MS

(2011) Clifton K. Fagerquist et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

(2011) Alexander Mellmann et al.   PLoS One

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

EnterohemorrhagicEscherichia coliO26:H11–Associated Hemolytic Uremic Syndrome: Bacteriology and Clinical Presentation

(2010) Lothar-Bernd Zimmerhackl et al.   SEMINARS IN THROMBOSIS AND HEMOSTASIS

Differential cytotoxic actions of Shiga toxin 1 and Shiga toxin 2 on microvascular and macrovascular endothelial cells

(2010) Andreas Bauwens et al.   THROMBOSIS AND HAEMOSTASIS

Characteristics of O157 versus Non‐O157 Shiga Toxin–ProducingEscherichia coliInfections in Minnesota, 2000–2006

(2009) Erin B. Hedican et al.   CLINICAL INFECTIOUS DISEASES

Surveillance of Hemolytic Uremic Syndrome in Children Less Than 15 Years of Age, a System to Monitor O157 and Non-O157 Shiga Toxin-Producing Escherichia coli Infections in France, 1996–2006

(2009) Emmanuelle Espié et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli

(2009) Y. Ogura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA