eQTL discovery and their association with severe equine asthma in European Warmblood horses

Joint genetic analysis using variant sets reveals polygenic gene-context interactions

(2017) Francesco Paolo Casale et al.   PLoS Genetics

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

(2016) Zhihong Zhu et al.   NATURE GENETICS

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Consensus Genome-Wide Expression Quantitative Trait Loci and Their Relationship with Human Complex Trait Disease

(2016) Chen-Hsin Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Insight into Genotype-Phenotype Associations through eQTL Mapping in Multiple Cell Types in Health and Immune-Mediated Disease

(2016) James E. Peters et al.   PLoS Genetics

eQTL of bronchial epithelial cells and bronchial alveolar lavage deciphers GWAS-identified asthma genes

(2015) X. Li et al.   ALLERGY

Asthma “of horses and men”—How can equine heaves help us better understand human asthma immunopathology and its functional consequences?

(2015) Michela Bullone et al.   MOLECULAR IMMUNOLOGY

The role of regulatory variation in complex traits and disease

(2015) Frank W. Albert et al.   NATURE REVIEWS GENETICS

Identification of candidate genes for prostate cancer-risk SNPs utilizing a normal prostate tissue eQTL data set

(2015) S. N. Thibodeau et al.   Nature Communications

The Transcriptome of Equine Peripheral Blood Mononuclear Cells

(2015) Alicja Pacholewska et al.   PLoS One

The Identification of Circulating MiRNA in Bovine Serum and Their Potential as Novel Biomarkers of Early Mycobacterium avium subsp paratuberculosis Infection

(2015) Damien Farrell et al.   PLoS One

Impaired Cell Cycle Regulation in a Natural Equine Model of Asthma

(2015) Alicja Pacholewska et al.   PLoS One

Genetics of upper and lower airway diseases in the horse

(2014) V. Gerber et al.   EQUINE VETERINARY JOURNAL

Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype

(2014) Manuel A.R. Ferreira et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

svaseq: removing batch effects and other unwanted noise from sequencing data

(2014) Jeffrey T. Leek   NUCLEIC ACIDS RESEARCH

Recurrent airway obstruction: A review

(2013) R. S. Pirie   EQUINE VETERINARY JOURNAL

Expression quantitative trait loci: present and future

(2013) A. C. Nica et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effect of hay dust extract and cyathostomin antigen stimulation on cytokine expression by PBMC in horses with recurrent airway obstruction

(2013) Simone Lanz et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

A Statistical Framework for Joint eQTL Analysis in Multiple Tissues

(2013) Timothée Flutre et al.   PLoS Genetics

Corticosteroids and Antigen Avoidance Decrease Airway Smooth Muscle Mass in an Equine Asthma Model

(2012) Mathilde Leclere et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

Replication and fine-mapping of a QTL for recurrent airway obstruction in European Warmblood horses

(2012) M. Shakhsi-Niaei et al.   ANIMAL GENETICS

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

(2012) A. A. Shabalin   BIOINFORMATICS

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

(2012) Jeffrey T. Leek et al.   BIOINFORMATICS

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

(2012) Oliver Stegle et al.   Nature Protocols

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Long-range DNA looping and gene expression analyses identify DEXI as an autoimmune disease candidate gene

(2011) Lucy J. Davison et al.   HUMAN MOLECULAR GENETICS

Heaves, an asthma-like disease of horses

(2011) MATHILDE LECLERE et al.   RESPIROLOGY

Effect of Antigenic Exposure on Airway Smooth Muscle Remodeling in an Equine Model of Chronic Asthma

(2010) Mathilde Leclere et al.   AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY

FastTagger: An efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium

(2010) Guimei Liu et al.   BMC BIOINFORMATICS

Analysis of deep sequencing microRNA expression profile from human embryonic stem cells derived mesenchymal stem cells reveals possible role of let-7 microRNA family in downstream targeting of Hepatic Nuclear Factor 4 Alpha

(2010) Winston Koh et al.   BMC GENOMICS

Relationship of horse owner assessed respiratory signs index to characteristics of recurrent airway obstruction in two Warmblood families

(2010) E. LAUMEN et al.   EQUINE VETERINARY JOURNAL

A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies

(2010) Oliver Stegle et al.   PLoS Computational Biology

A whole-genome scan for recurrent airway obstruction in Warmblood sport horses indicates two positional candidate regions

(2009) June E. Swinburne et al.   MAMMALIAN GENOME