Transcriptome analysis of Gossypium hirsutum flower buds infested by cotton boll weevil (Anthonomus grandis) larvae

Candidatus Liberibacter americanus induces significant reprogramming of the transcriptome of the susceptible citrus genotype

(2013) Valéria Mafra et al.   BMC GENOMICS

Comparative transcriptome analysis of Gossypium hirsutum L. in response to sap sucking insects: aphid and whitefly

(2013) Neeraj Kumar Dubey et al.   BMC GENOMICS

Role of phytohormones in insect-specific plant reactions

(2012) Matthias Erb et al.   TRENDS IN PLANT SCIENCE

Maternal Epigenetic Pathways Control Parental Contributions to Arabidopsis Early Embryogenesis

(2011) Daphné Autran et al.   CELL

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

(2011) R. Garg et al.   DNA RESEARCH

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry

(2011) Li Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression analysis of MAP2K9 and MAPK6 during pathogenesis of Alternaria blight in Arabidopsis thaliana ecotype Columbia

(2011) P. Kannan et al.   MOLECULAR BIOLOGY REPORTS

Calmodulin-Dependent Activation of MAP Kinase for ROS Homeostasis in Arabidopsis

(2011) Fuminori Takahashi et al.   MOLECULAR CELL

Ethylene-Responsive Element-Binding Factor 5, ERF5, Is Involved in Chitin-Induced Innate Immunity Response

(2011) Geon Hui Son et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

New Insights into Plant Responses to the Attack from Insect Herbivores

(2010) Jianqiang Wu et al.   Annual Review of Genetics

Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data

(2010) Sinara Artico et al.   BMC PLANT BIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

R2R3-NaMYB8 Regulates the Accumulation of Phenylpropanoid-Polyamine Conjugates, Which Are Essential for Local and Systemic Defense against Insect Herbivores in Nicotiana attenuata

(2010) H. Kaur et al.   PLANT PHYSIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Jasmonate- and salicylate-mediated plant defense responses to insect herbivores, pathogens and parasitic plants

(2009) Jordan L Smith et al.   PEST MANAGEMENT SCIENCE

Reactive Oxygen Species Are Involved in Plant Defense against a Gall Midge

(2009) X. Liu et al.   PLANT PHYSIOLOGY

The Role of WRKY Transcription Factors in Plant Immunity

(2009) S. P. Pandey et al.   PLANT PHYSIOLOGY

Comparative transcriptome analysis of Arabidopsis thaliana infested by diamond back moth (Plutella xylostella) larvae reveals signatures of stress response, secondary metabolism, and signaling

(2008) Juergen Ehlting et al.   BMC GENOMICS

Negative Regulation of PAMP-Triggered Immunity by an E3 Ubiquitin Ligase Triplet in Arabidopsis

(2008) Marco Trujillo et al.   CURRENT BIOLOGY

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

(2008) R. D. Morin et al.   GENOME RESEARCH

Innate Immunity Signaling: Cytosolic Ca2+ Elevation Is Linked to Downstream Nitric Oxide Generation through the Action of Calmodulin or a Calmodulin-Like Protein

(2008) W. Ma et al.   PLANT PHYSIOLOGY

Pepper pectin methylesterase inhibitor protein CaPMEI1 is required for antifungal activity, basal disease resistance and abiotic stress tolerance

(2008) Soo Hyun An et al.   PLANTA

Plant Immunity to Insect Herbivores

(2007) Gregg A. Howe et al.   Annual Review of Plant Biology