A hyper-dynamic nature of bivalent promoter states underlies coordinated developmental gene expression modules
出版年份 2015 全文链接
标题
A hyper-dynamic nature of bivalent promoter states underlies coordinated developmental gene expression modules
作者
关键词
Chromatin state, Differentiation, Hidden Markov Model, Promoter, Transcriptome
出版物
BMC GENOMICS
Volume 15, Issue 1, Pages 1186
出版商
Springer Nature
发表日期
2015-06-18
DOI
10.1186/1471-2164-15-1186
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Regression hidden Markov modeling reveals heterogeneous gene expression regulation: a case study in mouse embryonic stem cells
- (2014) Yeonok Lee et al. BMC GENOMICS
- Gene Silencing Triggers Polycomb Repressive Complex 2 Recruitment to CpG Islands Genome Wide
- (2014) Eva Madi Riising et al. MOLECULAR CELL
- H2B Ubiquitylation Promotes RNA Pol II Processivity via PAF1 and pTEFb
- (2014) Lipeng Wu et al. MOLECULAR CELL
- Nucleosomes Are Context-Specific, H2A.Z-Modulated Barriers to RNA Polymerase
- (2014) Christopher M. Weber et al. MOLECULAR CELL
- The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
- (2014) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Chromatin state dynamics during blood formation
- (2014) D. Lara-Astiaso et al. SCIENCE
- Epigenetic programming of monocyte-to-macrophage differentiation and trained innate immunity
- (2014) S. Saeed et al. SCIENCE
- PPARγ and the global map of adipogenesis and beyond
- (2014) Martina I. Lefterova et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Histone variants at the transcription start-site
- (2014) Tatiana A. Soboleva et al. TRENDS IN GENETICS
- Transcription Factor Cooperativity in Early Adipogenic Hotspots and Super-Enhancers
- (2014) Rasmus Siersbæk et al. Cell Reports
- Molecular Architecture of Transcription Factor Hotspots in Early Adipogenesis
- (2014) Rasmus Siersbæk et al. Cell Reports
- Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues
- (2013) Jiang Zhu et al. CELL
- From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing
- (2013) G. K. Marinov et al. GENOME RESEARCH
- Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation
- (2012) Guoliang Li et al. CELL
- Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization
- (2012) Iouri Chepelev et al. CELL RESEARCH
- Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation
- (2012) P. Yu et al. GENOME RESEARCH
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
- (2012) Stefan Bonn et al. NATURE GENETICS
- Unsupervised pattern discovery in human chromatin structure through genomic segmentation
- (2012) Michael M Hoffman et al. NATURE METHODS
- ChromHMM: automating chromatin-state discovery and characterization
- (2012) Jason Ernst et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?
- (2012) Karolin Luger et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Enhancers as information integration hubs in development: lessons from genomics
- (2012) Christa Buecker et al. TRENDS IN GENETICS
- Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State
- (2012) Bartek Wilczynski et al. PLoS Computational Biology
- Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells
- (2011) Oren Ram et al. CELL
- Impulse Control: Temporal Dynamics in Gene Transcription
- (2011) Nir Yosef et al. CELL
- Prepatterning of Developmental Gene Expression by Modified Histones before Zygotic Genome Activation
- (2011) Leif C. Lindeman et al. DEVELOPMENTAL CELL
- Pioneer transcription factors: establishing competence for gene expression
- (2011) K. S. Zaret et al. GENES & DEVELOPMENT
- Genome-wide function of H2B ubiquitylation in promoter and genic regions
- (2011) K. Batta et al. GENES & DEVELOPMENT
- A cis-regulatory map of the Drosophila genome
- (2011) Nicolas Nègre et al. NATURE
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Forming functional fat: a growing understanding of adipocyte differentiation
- (2011) Ana G. Cristancho et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Transcriptional networks and chromatin remodeling controlling adipogenesis
- (2011) Rasmus Siersbæk et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Comparative Epigenomic Analysis of Murine and Human Adipogenesis
- (2010) Tarjei S. Mikkelsen et al. CELL
- Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells
- (2010) Guillaume J. Filion et al. CELL
- Epigenetic Priming of a Pre-B Cell-Specific Enhancer through Binding of Sox2 and Foxd3 at the ESC Stage
- (2010) Daniel Liber et al. Cell Stem Cell
- β-Catenin Primes Organizer Gene Expression by Recruiting a Histone H3 Arginine 8 Methyltransferase, Prmt2
- (2010) Shelby A. Blythe et al. DEVELOPMENTAL CELL
- Propagation of adipogenic signals through an epigenomic transition state
- (2010) D. J. Steger et al. GENES & DEVELOPMENT
- Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis
- (2010) M. L. Conerly et al. GENOME RESEARCH
- Promoter DNA Methylation Patterns of Differentiated Cells Are Largely Programmed at the Progenitor Stage
- (2010) Anita L. Sørensen et al. MOLECULAR BIOLOGY OF THE CELL
- Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
- (2010) Peter V. Kharchenko et al. NATURE
- A unique chromatin signature uncovers early developmental enhancers in humans
- (2010) Alvaro Rada-Iglesias et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- Histone H3K27 methyltransferase Ezh2 represses Wnt genes to facilitate adipogenesis
- (2010) L. Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Timing of Gene Expression Responses to Environmental Changes
- (2009) Gal Chechik et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- New developments in adipogenesis
- (2009) Martina I. Lefterova et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Chromatin decouples promoter threshold from dynamic range
- (2008) Felix H. Lam et al. NATURE
- Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network
- (2008) Gal Chechik et al. NATURE BIOTECHNOLOGY
- Nucleosome destabilization in the epigenetic regulation of gene expression
- (2007) Steven Henikoff NATURE REVIEWS GENETICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now